PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU30292.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 732aa MW: 79025.4 Da PI: 6.4477 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 309 | 329 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg PHU30292.1 309 PCPEFRK-GACRRGDMCEYAHG 329 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence |
MCTGPERPNS SASTNQSVTD STSSMKGMTK LTVETEDSFS SLLELAANND LEGFKRSVEL 60 DASAIDEVGL WLVRKKGAKQ IVNEERTPLM VAATYGSLDV LKLIISNPVV DINRACGPNK 120 CTALHCATSG GSVNAVDAVK LLLSAGADPN VEDANGQRPA DVIVVPPKLL GARASLEELL 180 LNSSSDGSIG DCKLRVSVAT SNASSPILSS SPENGSPCSP ADSLSSPLAL KFDDIPANSA 240 PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CARRVCFFAH 360 TTEELRPLYV STGSAVPSPR SAASAASVMD MAAALNLFPG SPSAHTMMSP SAFNQPMSPT 420 ANGMSHSSGP WPQPNVPTLH LPGSNLQSSR LRSSLSARDI PPDDFNMLQD FDAQQLVLND 480 MACYSQPRPN SASLNRSGRS KTLTPSNLDE LFSAEMNSSP RYSDQAPASG VFSPSHKSAY 540 FNQFQQQQNM LSPINTNVFS PKNIEHPLLQ ASFGVSSPGR MSPRSMEPIS PMSARLSAFA 600 QREKQQQQLR SLSSRDLGSN NASIVGSPVG NSWSNWGSPS GKVDWSVNGS GLGNLRRSSS 660 FEQLNNGEEP DLSWVQSLVK ESPTEMKEKQ AAPNSSAAPS SESLKNSSQI DSVDHSVLGA 720 WLEQMQLDQL VA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |