PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU30282.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 796aa MW: 89107.3 Da PI: 7.8803

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU30282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.3e-07	349	369	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C yG+rC++ H+ PHU30282.1 349 VCLYYQK-GLCAYGNRCRYKHV 369 5999*.***********7 PP
2	zf-CCCH	23.4	1e-07	456	478	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+++Hg PHU30282.1 456 QSICS-FAAAGKCSRGEKCPYIHG 478 56899.*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence
MKYLKHMLGF SNYKRRLNIS EGEAYRLHAS EVIPHQVHPN TSTTLSIAPQ YKPTTFTTPH 60 VICDFVAQSS TEALAIRPTV VFPYAASGPM FNTLAQEQWP RKPKPQISHH VLNSEVFFDE 120 TGNMLPSNQG LQSINIKGYD ALLLQMQEAI LLHRFDNQTM VKIHHPISLG DTSLSRLLDP 180 KTFEARRDHG VTRRVIIVAD GEKILELGDL GCQFEDFANH NAFELLAKYR TTHLVFNDDI 240 QGTISVILAG IIASLKLLEP GQLFQADDQS LGLPQTDGDY PGGFSSPSSS ISLISSAKIP 300 VFIPIVPHLN EVNKEKSSRV LCKFFVHGAC LKGEYCEFSH DWKDPPNNVC LYYQKGLCAY 360 GNRCRYKHVK VSEQPTLPSS SAPAQHLRSA SPATTLSPGM LANDAGRLSG ISSEYLASSG 420 PFYPPNRPVW SENSEHHDVE EINSIVELKI INPSDQSICS FAAAGKCSRG EKCPYIHGDL 480 CPICVKHCLH PFRPQESGEH MKICEKRQKR LDLLKHSQEI ECSVCLERVL SKTTAAERKF 540 GILFECDHPF CISCIRNWRS GSPSSGVDIN STFRTCPVCR KLSYFVIPSV IWYTTKEEKK 600 DILDGYIAKL RTIDCKHYDF GNGTCPFGNS CFYKILPILV WWESSRAAPR PARIPSFCLL 660 YICIHSKCMP DAYGCYGPLL QHQHRDGPPE EVVLRNLGHE DGSTVTAKNI RLHLSSNLLS 720 SFYYDDNVHG LACLLAQLVL KEWGKVRVSC HQNLAQPKLD SSSAMLGSIL FSEARLNMIL 780 QKFGLGLTRI RLDPML

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence

MKYLKHMLGF SNYKRRLNIS EGEAYRLHAS EVIPHQVHPN TSTTLSIAPQ YKPTTFTTPH  60
VICDFVAQSS TEALAIRPTV VFPYAASGPM FNTLAQEQWP RKPKPQISHH VLNSEVFFDE  120
TGNMLPSNQG LQSINIKGYD ALLLQMQEAI LLHRFDNQTM VKIHHPISLG DTSLSRLLDP  180
KTFEARRDHG VTRRVIIVAD GEKILELGDL GCQFEDFANH NAFELLAKYR TTHLVFNDDI  240
QGTISVILAG IIASLKLLEP GQLFQADDQS LGLPQTDGDY PGGFSSPSSS ISLISSAKIP  300
VFIPIVPHLN EVNKEKSSRV LCKFFVHGAC LKGEYCEFSH DWKDPPNNVC LYYQKGLCAY  360
GNRCRYKHVK VSEQPTLPSS SAPAQHLRSA SPATTLSPGM LANDAGRLSG ISSEYLASSG  420
PFYPPNRPVW SENSEHHDVE EINSIVELKI INPSDQSICS FAAAGKCSRG EKCPYIHGDL  480
CPICVKHCLH PFRPQESGEH MKICEKRQKR LDLLKHSQEI ECSVCLERVL SKTTAAERKF  540
GILFECDHPF CISCIRNWRS GSPSSGVDIN STFRTCPVCR KLSYFVIPSV IWYTTKEEKK  600
DILDGYIAKL RTIDCKHYDF GNGTCPFGNS CFYKILPILV WWESSRAAPR PARIPSFCLL  660
YICIHSKCMP DAYGCYGPLL QHQHRDGPPE EVVLRNLGHE DGSTVTAKNI RLHLSSNLLS  720
SFYYDDNVHG LACLLAQLVL KEWGKVRVSC HQNLAQPKLD SSSAMLGSIL FSEARLNMIL  780
QKFGLGLTRI RLDPML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-128	C3H family protein