PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU30124.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 390aa MW: 42260.1 Da PI: 7.477

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU30124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	8.7e-18	200	254	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L +rqV vWFqNrRa+ k PHU30124.1 200 RKKLRLSKEQSAHLEESFKEHHTLNPKQKLALAKQLNLRQRQVEVWFQNRRARTK 254 778899***********************************************98 PP
2	HD-ZIP_I/II	123	1.4e-39	200	290	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk PHU30124.1 200 RKKLRLSKEQSAHLEESFKEHHTLNPKQKLALAKQLNLRQRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 290 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MELGLTLGDA NTVATTTTTT TTTSFLSKKN VCDDHEKKKG LGFCMALGIN SSSSGKILQQ 60 DEENEEENTS EEGTNNGTVP VQLDLLPLVP VPTPAPPLKS LHWSSDNGSS ENGSSGNGGL 120 PAARGFDVNR LPAVGMEEVT SPNSVASSFR MEFGLFKNCV NIIGVGNKRS SDSAVGNDGG 180 DPERASSRAS DEDENGVNTR KKLRLSKEQS AHLEESFKEH HTLNPKQKLA LAKQLNLRQR 240 QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTEENRRLH KELQELRALK TSNPFYMQLP 300 ATTLTMCPSC ERVASTTTSA PAAAAPPIIA TGTTTTTTTT KAPSTTTTTT ATNDNIPKAI 360 PFLNSRPRFF PFTTTTTNNN PSHSHQSAAS

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MELGLTLGDA NTVATTTTTT TTTSFLSKKN VCDDHEKKKG LGFCMALGIN SSSSGKILQQ  60
DEENEEENTS EEGTNNGTVP VQLDLLPLVP VPTPAPPLKS LHWSSDNGSS ENGSSGNGGL  120
PAARGFDVNR LPAVGMEEVT SPNSVASSFR MEFGLFKNCV NIIGVGNKRS SDSAVGNDGG  180
DPERASSRAS DEDENGVNTR KKLRLSKEQS AHLEESFKEH HTLNPKQKLA LAKQLNLRQR  240
QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTEENRRLH KELQELRALK TSNPFYMQLP  300
ATTLTMCPSC ERVASTTTSA PAAAAPPIIA TGTTTTTTTT KAPSTTTTTT ATNDNIPKAI  360
PFLNSRPRFF PFTTTTTNNN PSHSHQSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	205	TRKKLRL
2	249	257	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	7e-65	HD-ZIP family protein