PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU30061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 257aa MW: 29883.3 Da PI: 6.0561 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.3 | 4.7e-19 | 8 | 58 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ ++rqvtfskRr ++KKA+E+ + Cd++v+ + fs++g+l +ss PHU30061.1 8 KKIEEITKRQVTFSKRRSNLMKKAKEIDICCDVDVLFVAFSPSGRLSKFSS 58 689*********************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MGRKIEMKKI EEITKRQVTF SKRRSNLMKK AKEIDICCDV DVLFVAFSPS GRLSKFSSKK 60 SIEDTLQRYI NLPVERRFRN YKPGAEQESS LHQLCWCESN LKLSLEKVMA RKMKLETQEK 120 MDLQFAAQQT APQQFDNWVN PYRPILSPIS TMGIQLNNAS QLGLEYAHSN WNINLNHNNN 180 NNNTIQHNDH NITTIVQNDE RAPNESNNTM EANTKQTSEY FVESANDNDA WEWDNDFLNE 240 AFSGEEFRNM DSSSNDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 3e-20 | MIKC_MADS family protein |