PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU29608.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 472aa    MW: 53228.9 Da    PI: 6.4645
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU29608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS470.11.2e-143494691374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl+cA++v++g+le+a+ +L ++s+lasp+gd+mqR+a+yf+eALa r++rs++++ykal++++     +se + + k+f+e +P+lk++ +++N
  PHU29608.1  49 LIHLLLTCANHVAAGNLENANIALDQISHLASPNGDTMQRIASYFAEALADRIMRSWHGIYKALHSTKLW--MVSEDILVKKMFFEYFPFLKVASVITN 145
                 689*************************************************************999887..5999*********************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaI ea+ege++vHi+D+++s++lQW aLlq L++Rpegpp+lRiTgv++    +ke le++++ L++ Ae+l++pf+f+  v+++le+l++e+Lrvk+
  PHU29608.1 146 QAIIEAMEGEKMVHIVDLNASEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLEQIAHVLTEEAEKLDIPFQFHQ-VVSKLENLDIEKLRVKT 239
                 **************************************************....9**************************.799************** PP

        GRAS 199 gEalaVnlvlqlhrll.......................................................desvsles..erdevLklvkslsPkvvv 240
                 gEala+++v+qlh+ll                                                           s++   + d +L+++++lsPkv+v
  PHU29608.1 240 GEALAISSVMQLHTLLahddeppkksplafknlnglhlqrsllnqntlgdllekdtpnvfspgnesassspL---STTAsaKMDGFLHALWGLSPKVMV 335
                 ******************************************************************986642...2222336899************** PP

        GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                 v+eq+++hn+++++er++e+l++y+alfd+le +l r+s er kvE++l+g+ei+n+vaceg er+erhe+l kW +r++ aGF++vpls++a+ qa++
  PHU29608.1 336 VTEQDSNHNGTTLMERLSESLHFYAALFDCLEFTLQRTSLERLKVEKMLFGEEIKNIVACEGGERKERHEKLDKWFQRFDGAGFGNVPLSYYAMLQARR 434
                 *************************************************************************************************** PP

        GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ll+ ++ +gy+++ee+gs+v++W+drpL+svSaWr
  PHU29608.1 435 LLQSYSCEGYKIKEERGSVVICWQDRPLFSVSAWR 469
                 **********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    
MLQDDGSSSV TSSSPLQNFS MISSLSPGFG GSPYQWLKEL KSEERGLYLI HLLLTCANHV  60
AAGNLENANI ALDQISHLAS PNGDTMQRIA SYFAEALADR IMRSWHGIYK ALHSTKLWMV  120
SEDILVKKMF FEYFPFLKVA SVITNQAIIE AMEGEKMVHI VDLNASEPLQ WRALLQDLSA  180
RPEGPPHLRI TGVHQQKEVL EQIAHVLTEE AEKLDIPFQF HQVVSKLENL DIEKLRVKTG  240
EALAISSVMQ LHTLLAHDDE PPKKSPLAFK NLNGLHLQRS LLNQNTLGDL LEKDTPNVFS  300
PGNESASSSP LSTTASAKMD GFLHALWGLS PKVMVVTEQD SNHNGTTLME RLSESLHFYA  360
ALFDCLEFTL QRTSLERLKV EKMLFGEEIK NIVACEGGER KERHEKLDKW FQRFDGAGFG  420
NVPLSYYAML QARRLLQSYS CEGYKIKEER GSVVICWQDR PLFSVSAWRC RR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein