PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU29193.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 835aa    MW: 91004.1 Da    PI: 6.2165
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU29193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.9e-21132187156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  PHU29193.1 132 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 187
                 688999***********************************************999 PP
2START202.61.6e-633395631206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela++a++elvk+a+ +ep+W++s     e +n++e++++f++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e+++    + +t++vis
  PHU29193.1 339 ELALAAMDELVKMAQTDEPLWFRSMeggrEVLNQEEYMRTFTPCIGmrpntFVSEASRETGMVIINSLALVETLMDSN-KWAEMFPcliaRTSTTDVIS 436
                 5899************************9*************9999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 sg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +  + +  +++lpSg+++++++ng+skvtwveh+++++   h
  PHU29193.1 437 SGmggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDTIRETSAAPTFQSCRRLPSGCVVQDMPNGYSKVTWVEHAEYDEGANH 535
                 ********************************************************9999*************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                  l+r+l++ g+ +ga++wvatlqrqce+
  PHU29193.1 536 HLYRQLISAGMGFGAQRWVATLQRQCEC 563
                 **************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    
MNFGGFLDNN SGGGGARIVA DTPFNNNSSS GNNKSSNNNN NDNNMPTGAI SQPRLLPQSL  60
AKTMFNSPGL SLALQTGMEG QNDVTRMGEA YEGNNSVGRR SREEEPDSRS GSDNLEGASG  120
DEQDAADKPP RKKRYHRHTP QQIQELESLF KECPHPDEKQ RLELSKRLCL ETRQVKFWFQ  180
NRRTQMKTQL ERHENSILRQ ENDKLRAENM SIREAMRNPI CTNCGGPAMI GEISLEEQHL  240
RIENARLKDE LDRVCALAGK FLGRPISSLV TSMPPPMPNS SLELGVGSNG FGGLSNVPTS  300
LPLAPPDFGV GISASMPVVP STRQTSGIER SLERSMYLEL ALAAMDELVK MAQTDEPLWF  360
RSMEGGREVL NQEEYMRTFT PCIGMRPNTF VSEASRETGM VIINSLALVE TLMDSNKWAE  420
MFPCLIARTS TTDVISSGMG GTRNGALQLM HAELQVLSPL VPIREVNFLR FCKQHAEGVW  480
AVVDVSIDTI RETSAAPTFQ SCRRLPSGCV VQDMPNGYSK VTWVEHAEYD EGANHHLYRQ  540
LISAGMGFGA QRWVATLQRQ CECLAILMSS TVTSRDHTAI TPSGRRSMLK LAQRMTNNFC  600
AGVCASTVHK WNKLCAGNVD EDVRVMTRKS VDDPGEPPGI VLSAATSVWL PVSPQRLFDF  660
LRDERLRSEW DILSNGGPMQ EMAHIAKGQD HGNCVSLLRA SAMNANQSSM LILQETCIDA  720
AGALVVYAPV DIPAMHVVMN GGDSAYVALL PSGFSIVPDG PGSRGSSAGN CGSNGPPSCN  780
GGPDQRISGS LLTVAFQILV NSLPTAKLTV ESVETVNNLI SCTVQKIKGA LHCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein