PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU29179.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 451aa MW: 50092.9 Da PI: 7.7156

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU29179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.3	5.4e-23	145	188	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC+r+v++g+k+CE H+hrg rsrk++e+ PHU29179.1 145 DPEPGRCRRTDGKKWRCRRDVIPGQKYCEQHMHRG-RRSRKHVEA 188 79*********************************.799999987 PP
2	WRC	62	9.5e-20	345	383	2	40
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 +e+ rCrR+DGKkWRCsr+v++ +k+CE H+hrg +r++ PHU29179.1 345 TEQERCRRSDGKKWRCSRNVVPHQKYCEIHMHRGAKRKS 383 6899******************************99986 PP
3	QLQ	42.2	2.5e-15	81	116	1	36
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s FT aQ+ +L Q+ ++KyL++++PvP +L + i+ PHU29179.1 81 SVFTEAQFRELQLQAVIFKYLVSGLPVPFHLFFTIW 116 67*****************************99998 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MVEILSNTIW IACETEEYER IQFNFSFGQQ LEISDCVGKG KEDEIKEEQV SPPPCIELSL 60 GNGSSSHVVE EEEVKDGKAK SVFTEAQFRE LQLQAVIFKY LVSGLPVPFH LFFTIWSSVS 120 SSLGDGGIYK LYPTLGRFDY TSMMDPEPGR CRRTDGKKWR CRRDVIPGQK YCEQHMHRGR 180 RSRKHVEASE YVKKSDDASV ASLRAKLYAS SDDLGSKCAP ASSKTSCLSS SRNNQNISIE 240 DSSTKPRFIN SSNSSDKKDN LMTCNRKDNA SCPRTPSFIA GDNADSKNID FNRISPSTTN 300 QKQNCGDARN DGALLPIYGV LAKSDLQHTT GITNLTFGCH TCSETEQERC RRSDGKKWRC 360 SRNVVPHQKY CEIHMHRGAK RKSVAPDSVV VPPSKPSFCP PENDATGRNL NTSLSIYTIP 420 GPQNTTDGDS NSNSTSDATT ITDEIPAFVS R

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MVEILSNTIW IACETEEYER IQFNFSFGQQ LEISDCVGKG KEDEIKEEQV SPPPCIELSL  60
GNGSSSHVVE EEEVKDGKAK SVFTEAQFRE LQLQAVIFKY LVSGLPVPFH LFFTIWSSVS  120
SSLGDGGIYK LYPTLGRFDY TSMMDPEPGR CRRTDGKKWR CRRDVIPGQK YCEQHMHRGR  180
RSRKHVEASE YVKKSDDASV ASLRAKLYAS SDDLGSKCAP ASSKTSCLSS SRNNQNISIE  240
DSSTKPRFIN SSNSSDKKDN LMTCNRKDNA SCPRTPSFIA GDNADSKNID FNRISPSTTN  300
QKQNCGDARN DGALLPIYGV LAKSDLQHTT GITNLTFGCH TCSETEQERC RRSDGKKWRC  360
SRNVVPHQKY CEIHMHRGAK RKSVAPDSVV VPPSKPSFCP PENDATGRNL NTSLSIYTIP  420
GPQNTTDGDS NSNSTSDATT ITDEIPAFVS R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	6e-32	GRF family protein