PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28835.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRF

Protein Properties

Length: 322aa MW: 35805.7 Da PI: 8.6357

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.6	6.2e-25	48	92	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ PHU28835.1 48 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 92 79****************************************986 PP
2	QLQ	28.5	4.7e-11	1	22	16	37
QLQ 16 lAyKyLaanqPvPpeLlqaiqk 37 ++yKyL+a++PvPp+L+++i++ PHU28835.1 1 MIYKYLVAGLPVPPDLVVPIRR 22 8*******************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MIYKYLVAGL PVPPDLVVPI RRSFEAISAR FFHHPSLGYC SYYGKKFDPE PGRCRRTDGK 60 KWRCSKDAYP DSKYCERHMH RGRNRSRKPV ESQSTSQSLS TSMSQITTGS SNTRGSFQTS 120 GSGSFQNMPL YSVANSGALN YGSTATKLQK EPVSCGIDNK DYRYLHGIAP DADEHNLSSE 180 ASATVRSFGM GTNTDGTWVF PSQVSSSPMA RQKNDSQILG SSTEMHLPNL LEPMIDSTIS 240 KRRHQHCFFG SDIDSPGTVK EEQQHSMRPF FNEWPTAKES WSNLDDEGSN KNNFSTTQLS 300 ISIPIAPSNF SSRSACSPNG EY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-38	GRF family protein