PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28766.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 393aa MW: 45244.4 Da PI: 9.3303

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.1	1.2e-14	68	127	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g PHU28766.1 68 SRFRGVSRHRWTGRYEAHLWDkASWNVtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 127 789****************877754655447***********************98 PP
2	AP2	44.7	3.3e-14	170	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ ++rW+A+I ++ +k+ +lg++ t ee a+a++ a +++g PHU28766.1 170 SKYRGVARHHHNNRWEARIGRVYG---NKYLYLGTYSTQEEVARAYDIAEIEYRG 221 89**99*******99654...4***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MSRGIRRSLC MVDYDIPVNN KCTKRRRKSP ASAVIMNDDN YNNGQKLDSK KGDQNNIIVQ 60 TPTVKRSSRF RGVSRHRWTG RYEAHLWDKA SWNVTQKKKG KQVYLGAYDE EESAARAYDL 120 AAIKYWGTST FTNFPMSDYE KEIEIMQNMT KEEHLASLRR SSSGFARGVS KYRGVARHHH 180 NNRWEARIGR VYGNKYLYLG TYSTQEEVAR AYDIAEIEYR GTNAMTNFDM NTYMRWLKPD 240 ANSQMSFQDL TSENQPIQSN NSGDMINRIN DPSYSFNPSC FTTNAEKFYA IPQSQEPIER 300 KMPFSSCKKS PSSTALSLLL RSSMFQELVE KNSSTDSEES NVKNEAQSST ENEFVFYTND 360 KKLPKLESLE NGTSSSALCD RSGQQQYFWS LMS

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MSRGIRRSLC MVDYDIPVNN KCTKRRRKSP ASAVIMNDDN YNNGQKLDSK KGDQNNIIVQ  60
TPTVKRSSRF RGVSRHRWTG RYEAHLWDKA SWNVTQKKKG KQVYLGAYDE EESAARAYDL  120
AAIKYWGTST FTNFPMSDYE KEIEIMQNMT KEEHLASLRR SSSGFARGVS KYRGVARHHH  180
NNRWEARIGR VYGNKYLYLG TYSTQEEVAR AYDIAEIEYR GTNAMTNFDM NTYMRWLKPD  240
ANSQMSFQDL TSENQPIQSN NSGDMINRIN DPSYSFNPSC FTTNAEKFYA IPQSQEPIER  300
KMPFSSCKKS PSSTALSLLL RSSMFQELVE KNSSTDSEES NVKNEAQSST ENEFVFYTND  360
KKLPKLESLE NGTSSSALCD RSGQQQYFWS LMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	7e-90	AP2 family protein