PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU28673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LSD | ||||||||
Protein Properties | Length: 155aa MW: 16412.1 Da PI: 8.265 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 31.3 | 3.5e-10 | 43 | 62 | 6 | 25 |
zf-LSD1 6 tlLsYPrGApsVRCalCdtV 25 +lL YP GA+sV+Ca+C++V PHU28673.1 43 NLLLYPVGATSVCCAVCNAV 62 69*****************9 PP | |||||||
2 | zf-LSD1 | 46.7 | 5.3e-15 | 77 | 101 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV PHU28673.1 77 CGGCHTLLMYIRGATSVQCSCCHTV 101 ************************9 PP | |||||||
3 | zf-LSD1 | 41.7 | 1.9e-13 | 115 | 139 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V PHU28673.1 115 CGNCRMLLMYQYGARSVKCAVCNFV 139 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
LHNASSACSV SLHHQPHLHH LLTLSGETAS RSSRIKPVHK IINLLLYPVG ATSVCCAVCN 60 AVTAVPPPGT EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM 120 LLMYQYGARS VKCAVCNFVT SVGVSTSAAE QKFNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 6e-60 | LSD family protein |