PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28477.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 170aa MW: 19590.4 Da PI: 9.9527

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28477.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.1	1.1e-13	15	63	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie+k r+v fskR+ng+ KKA+ S L++a+v i+f + gk + y PHU28477.1 15 KLIESKEARTVAFSKRKNGLGKKAKDYSNLTGADVGFILFTQAGKPHSY 63 569*****************************************98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MDKRGGKGRQ KIEMKLIESK EARTVAFSKR KNGLGKKAKD YSNLTGADVG FILFTQAGKP 60 HSYGSPSIEK VINKFHELKQ NDSLQNHTDM SKTNVFEAFE DLRKEVQEFK EKYLDSEMPI 120 DKHLLENRLK QFEAYKSRLD KIKKEIKGDV PAEQFKFISE VALDLEKMSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36590.1	2e-18	M-type_MADS family protein