PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU28457.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31883.8 Da    PI: 7.3971
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU28457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-18132186256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  PHU28457.1 132 RKKLRLSKDQSVILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTK 186
                 788899***********************************************98 PP
2HD-ZIP_I/II127.94.3e-41132221191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+ +LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
   PHU28457.1 132 RKKLRLSKDQSVILEESFKEHNTLNPKQKLALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 221
                  69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MMVEKEDLGL SLSLSFPDNS NNNKNTTTSI NHQLGLSPFN TIHKTSWADS LFPSSDRNSE  60
TCRVETRTFL KGIDVNRLPE TVDADEEAGV SSPNSTISSL SGNKRSEREA NNCDLEHEME  120
RGSDEEDGET SRKKLRLSKD QSVILEESFK EHNTLNPKQK LALAKRLGLR PRQVEVWFQN  180
RRARTKLKQT EVDCEFLKRC CENLTEENRR LQKEVQELRA LKLSPQFYMQ MTPPTTLTMC  240
PSCERVGAPP SSSSGPTSTP MGQAQPRAMP FNLWANALHP RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137SRKKLRL
2181189RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-101HD-ZIP family protein