PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28336.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 362aa MW: 39351.8 Da PI: 7.3847

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.2	8.5e-36	67	174	2	108
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaks 93 a+++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + + + n++++ +++ PHU28336.1 67 APRRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVsvngtlkIPTTAPVR--NDNEEIDEND 163 789*************************************************************88888443322222211111111..1111111111 PP TCP 94 aakskksqksaasal 108 + +k+++ks++ + PHU28336.1 164 T--HKRRRKSTN--S 174 1..111111111..1 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MSNYHDPDDD CGNSELSNCT AVEQNDRKMD NNEIYNGKQV VLSSLKEEPF DTHQLAPAMP 60 ITVSATAPRR PSTKDRHTKV EGRGRRIRIP ATCAARIFQL TRELGHKSDG ETVRWLLEHA 120 EEAIIEATGT GTVPAIAVSV NGTLKIPTTA PVRNDNEEID ENDTHKRRRK STNSEFVNAA 180 NVSQFAPATT TTATAINGPP HGHGLVPVWA MSNGGIMVPS NAIWMVPAIS HTNNNNSNNS 240 SILQYPQLWA ITPSVTPVFN LATRPISPFV AASATNINGS PPVMMAGPLT TTGPKVGSNK 300 SSMAPASLSS SSSIDRNNNN NNDVKPHMLR DFSLEIYDRK ELQFKNRSES HQQEAQVTSS 360 KP

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MSNYHDPDDD CGNSELSNCT AVEQNDRKMD NNEIYNGKQV VLSSLKEEPF DTHQLAPAMP  60
ITVSATAPRR PSTKDRHTKV EGRGRRIRIP ATCAARIFQL TRELGHKSDG ETVRWLLEHA  120
EEAIIEATGT GTVPAIAVSV NGTLKIPTTA PVRNDNEEID ENDTHKRRRK STNSEFVNAA  180
NVSQFAPATT TTATAINGPP HGHGLVPVWA MSNGGIMVPS NAIWMVPAIS HTNNNNSNNS  240
SILQYPQLWA ITPSVTPVFN LATRPISPFV AASATNINGS PPVMMAGPLT TTGPKVGSNK  300
SSMAPASLSS SSSIDRNNNN NNDVKPHMLR DFSLEIYDRK ELQFKNRSES HQQEAQVTSS  360
KP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	4e-51	TCP family protein