PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28334.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TALE

Protein Properties

Length: 1229aa MW: 139350 Da PI: 7.4439

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28334.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.6	7.4e-07	236	269	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + PHU28334.1 236 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 269 468*****************************87 PP
2	ELK	24	8.8e-09	190	211	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ PHU28334.1 190 ELKIELKQGFRSRIEDVREEIL 211 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1229 aa Download sequence
MGSTSHHHDI SSMMISDDIN HSTQLKGEIA THPLYEQLLS AHVACLRVAT PIDQLPLIDA 60 QLSQSGSLLR SYVSSQQHQQ LSPHERQELD NFLAQYLLVL CSFKEQLQQH VRVHAVEAVM 120 ACREIEQNLQ VLTGATLGEG TGATMSDDED ELQMDFSLDQ SGGDAHDLMG MGFGLPTESE 180 RSLMERVRQE LKIELKQGFR SRIEDVREEI LRKRRAGKLP GDTTTVLKNW WQQHSKWPYP 240 TEDDKAKLVE ETGLQLKQIN NWFINQRKRN WHSNSQSVTS LKSKQGVVMA QLSYSDSMSG 300 SSQHGVQVVP FKTSTGSLRV LLLHGNLDIW VKEAKNLPNM DLFHKKLDNL FGGLAKIGSK 360 KEGSSPKITS DPYVTVSVSN AVVARTYVIN NSENPVWMQH FYVPVAHYAS EVHFVVKDND 420 VVGSQLIGAV GISVEQLCSG ALIEGTFPVL NGSGKPCKEG AMLTLSIQFT PMERVPLYHG 480 GVGGHHEYQG VPGTYFPLRR GGKVTLYQDA HVPDGSLPNL WLENGVQYQH GQCWKDIYDA 540 INQARRLIYI TGWSVYHLVT LVRDDDNAEK SVLGEILKRK SQEGVRVLLL VWDDPTSKSI 600 LGYKTEGIMG TNDEETRRYF KHSSVQVLLC PRSAGKGHSW AKKQETETIY THHQKTVIVD 660 ADAGNYQRKI MAFVGGLDLC KGRYDTPQHP IFKTLQNVHK DDFHQPNYTG PTTGCPREPW 720 HDLHSRIEGP AAYDVLTNFE ERWLKASKRH GLQKMKASHD DALLKLDRIP DILGIAEVPC 780 IREDVPDTWH VQIFRSIDSN SVKGFPKDPK EATNRARFFL PNNLVCGKNV LIDMSIHTAY 840 VKAIRAAQHF IYIENQYFLG SSYNWSNYQN LGANNLIPME IALKIANKIR ANERFAAYIV 900 LPMWPEGVPT STATQRILFW QHNTMQMMYE TIYKALQEVG LQNTYEPQDY LIFFCLGNRE 960 VPENAITTVA RSSKPSTPQE LTQKSRRFMI YVHSKGMIVD DEYVILGSAN INQRSLEGTR 1020 DTEIAMGAYQ PHHTWANKHT GPHAQIYGYR MSLWAEHTAT LEQCFEHPES LECVRRMRVF 1080 GEHNWLQYAA DEVTEMRGHL LKYPVEVDRT GKVKSLPGCE TFPDIGGKII VNDNDMMEKT 1140 LSIFHASNVL LQQQYREKDF RKYTELSFYL LVAEQNNDLL MKNHENQPTR YAPFPEVNDV 1200 HAHHARRGKG RGPDRGRGRG PRKKSCSGC

Sequence ? help Back to Top

Protein Sequence Length: 1229 aa Download sequence

MGSTSHHHDI SSMMISDDIN HSTQLKGEIA THPLYEQLLS AHVACLRVAT PIDQLPLIDA  60
QLSQSGSLLR SYVSSQQHQQ LSPHERQELD NFLAQYLLVL CSFKEQLQQH VRVHAVEAVM  120
ACREIEQNLQ VLTGATLGEG TGATMSDDED ELQMDFSLDQ SGGDAHDLMG MGFGLPTESE  180
RSLMERVRQE LKIELKQGFR SRIEDVREEI LRKRRAGKLP GDTTTVLKNW WQQHSKWPYP  240
TEDDKAKLVE ETGLQLKQIN NWFINQRKRN WHSNSQSVTS LKSKQGVVMA QLSYSDSMSG  300
SSQHGVQVVP FKTSTGSLRV LLLHGNLDIW VKEAKNLPNM DLFHKKLDNL FGGLAKIGSK  360
KEGSSPKITS DPYVTVSVSN AVVARTYVIN NSENPVWMQH FYVPVAHYAS EVHFVVKDND  420
VVGSQLIGAV GISVEQLCSG ALIEGTFPVL NGSGKPCKEG AMLTLSIQFT PMERVPLYHG  480
GVGGHHEYQG VPGTYFPLRR GGKVTLYQDA HVPDGSLPNL WLENGVQYQH GQCWKDIYDA  540
INQARRLIYI TGWSVYHLVT LVRDDDNAEK SVLGEILKRK SQEGVRVLLL VWDDPTSKSI  600
LGYKTEGIMG TNDEETRRYF KHSSVQVLLC PRSAGKGHSW AKKQETETIY THHQKTVIVD  660
ADAGNYQRKI MAFVGGLDLC KGRYDTPQHP IFKTLQNVHK DDFHQPNYTG PTTGCPREPW  720
HDLHSRIEGP AAYDVLTNFE ERWLKASKRH GLQKMKASHD DALLKLDRIP DILGIAEVPC  780
IREDVPDTWH VQIFRSIDSN SVKGFPKDPK EATNRARFFL PNNLVCGKNV LIDMSIHTAY  840
VKAIRAAQHF IYIENQYFLG SSYNWSNYQN LGANNLIPME IALKIANKIR ANERFAAYIV  900
LPMWPEGVPT STATQRILFW QHNTMQMMYE TIYKALQEVG LQNTYEPQDY LIFFCLGNRE  960
VPENAITTVA RSSKPSTPQE LTQKSRRFMI YVHSKGMIVD DEYVILGSAN INQRSLEGTR  1020
DTEIAMGAYQ PHHTWANKHT GPHAQIYGYR MSLWAEHTAT LEQCFEHPES LECVRRMRVF  1080
GEHNWLQYAA DEVTEMRGHL LKYPVEVDRT GKVKSLPGCE TFPDIGGKII VNDNDMMEKT  1140
LSIFHASNVL LQQQYREKDF RKYTELSFYL LVAEQNNDLL MKNHENQPTR YAPFPEVNDV  1200
HAHHARRGKG RGPDRGRGRG PRKKSCSGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-137	TALE family protein