PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU28277.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 678aa    MW: 75169.7 Da    PI: 6.2779
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU28277.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.43.9e-1292966621373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cAea+ s++ + +++l+arl +lasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + +  +++ +al+l+++vsPi+kf h+t N
  PHU28277.1 296 LISLLVSCAEAIGSRNVTGVNQLIARLGQLASPRGSPISRLTAYFTEALALRVARLWPHIFHIVPPRDLD-RLDDDSSSALRLLNQVSPIPKFIHFTSN 393
                 5799****************************************************************98.56788899******************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 + +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+ l etg+rLa+fAe+l++ fef++ v++rled++l++L+vk+
  PHU28277.1 394 EILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLVETGDRLAEFAEALNLAFEFHP-VVDRLEDVRLWMLHVKE 487
                 **************************************************....9**************************.7**************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 gE++aVn+vlq+hrll ++       +++L l++s++P+++ ++eqea hn++s+ +r++++l+yy+a+fds+  +lp +s +rik+E+  ++rei+n+
  PHU28277.1 488 GESVAVNCVLQMHRLLYDNSGGI--LRDFLGLIRSTNPTIILLAEQEAAHNEPSLDARLVNSLRYYAAVFDSIGFNLPLDSPARIKIEEL-FAREIRNI 583
                 ***************95544433..479************************************************************98.******** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                 +aceg++r+erhe ++kWr+ +e+  F+   ++e++  q ++ll++++ + yrv    +++++l+l W d+pL +vSaW
  PHU28277.1 584 IACEGRDRTERHECFGKWRNLMEQGSFRCTGITERELLQSQMLLKMYSCEDYRVTkqgNDDAALTLSWLDQPLCTVSAW 662
                 ************************************************888***94445589999************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    
MLAGCSSSLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDTSR SQAIRPVGLS  60
VEKPIEAKNS SCSLKQNIRL PPSSTSAQTS YVEGRRESKD EFWEKGRSLK RYAEQGCLDD  120
ETCMSRAKRK KGNRKSGDCS EEGYGLSLRQ LGGGDFWLQS GFNVARSVPL IAGLHPPQAA  180
PFSFSCSGEE ESVCYVPSEV ISPPPPLSNN PWIESVVTEI TNFGDKNAST SQDLAKETSV  240
SSASLDSHGL VLRPNEIPGE HEVGNGSRQP NPNDRGEVVA AHNGHNNHRE DDAAELISLL  300
VSCAEAIGSR NVTGVNQLIA RLGQLASPRG SPISRLTAYF TEALALRVAR LWPHIFHIVP  360
PRDLDRLDDD SSSALRLLNQ VSPIPKFIHF TSNEILLRAF EGKDRVHIID FDIKQGLQWP  420
SLFQSLASRP NPPTHVRITG IGESKQDLVE TGDRLAEFAE ALNLAFEFHP VVDRLEDVRL  480
WMLHVKEGES VAVNCVLQMH RLLYDNSGGI LRDFLGLIRS TNPTIILLAE QEAAHNEPSL  540
DARLVNSLRY YAAVFDSIGF NLPLDSPARI KIEELFAREI RNIIACEGRD RTERHECFGK  600
WRNLMEQGSF RCTGITEREL LQSQMLLKMY SCEDYRVTKQ GNDDAALTLS WLDQPLCTVS  660
AWAPIDAAGS SSSYYQPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein