PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU28202.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 664aa    MW: 74771.6 Da    PI: 9.2594
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU28202.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.4e-123380556
         AP2  5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                G+r+ k +gr++A+I dp    +r k+++lg+f+t eeA +a+ a + ++++e
  PHU28202.1 33 GIRRQK-SGRYAARITDP----IRhKKVWLGTFDTIEEASQAYFAKKSEFHNE 80
                999888.8*********7....357********************99999986 PP
2AP223.91.1e-07220263753
         AP2   7 rwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                 ++++k+gr+ A+I dp        ++++lg+f+t e+A +a+   + ++
  PHU28202.1 220 TRREKSGRYSARITDP-----ImhTKVHLGTFDTIEQASQAYLSKKSEF 263
                 467779*********8.....457******************8776665 PP
3AP232.22.7e-10309355454
         AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                  G+r++k +gr++AeI dp     + ++++lg+f t eeA +a+   + ++e
  PHU28202.1 309 VGIRRRK-NGRYFAEITDPI----KhQKVYLGTFNTIEEASQAYLSKKSEFE 355
                 59**999.8*********72....46******************88776665 PP
4AP230.31e-09399441450
         AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaar 50 
                  G+r++k +gr++AeI dp     + ++++lg+f+t e+A +a+   +
  PHU28202.1 399 VGIRRRK-NGRYFAEITDPI----KhQKVYLGTFDTIEQASQACLSKK 441
                 69**999.8*********72....46**********888888876555 PP
5AP2292.6e-09491535552
         AP2   5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                 GV   k+ gr+ +eI  p     + k+++lg+f+taeeA  a+   +++
  PHU28202.1 491 GVNKSKTIGRYTSEITNPI----TkKKIWLGTFDTAEEASHAYQSKKLE 535
                 9*************99972....36*****************9776665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    
MDNKEDFNCN KLAVNIEQGI EVESCNDKLS LIGIRRQKSG RYAARITDPI RHKKVWLGTF  60
DTIEEASQAY FAKKSEFHNE KLSHQGSKKG KRIHETLRFG GVHKKKKRGK YYYESTSPIS  120
KKRVWLGTFG AAEEGSWVDH QSKKLEFELD GKLEFDVSIS NADNVGIDRR IDCHEIGTAV  180
EASRVFDSCL MANVRGAESS DECNVPRNGD PKDKISLVGT RREKSGRYSA RITDPIMHTK  240
VHLGTFDTIE QASQAYLSKK SEFEKIRKGN KVNKPKNNCD RIQQPESPSV VETVNTAASC  300
DPKAMRSLVG IRRRKNGRYF AEITDPIKHQ KVYLGTFNTI EEASQAYLSK KSEFEKLRQG  360
NKDNKPKKNC DQILQPESTS VLETLNTATS CDPKDKSLVG IRRRKNGRYF AEITDPIKHQ  420
KVYLGTFDTI EQASQACLSK KSEFEKLRQG NKDNKTEPEP PSVVASLDTA VSASGRDKRI  480
GSRKRKAHTV GVNKSKTIGR YTSEITNPIT KKKIWLGTFD TAEEASHAYQ SKKLEFQNLV  540
KAKQQQCTKA QTHSEQDAEK EKSVNVEQGH ENVNCEPFQL ESYVGSPDVD VLLSNASSGE  600
TVQSTDSDKI GNTEEAFHVY QSKKLDDSES PQKVELQXVQ PCDQGVHEFE LWKQSHADLQ  660
GKTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1483513RKRKAHTVGVNKSKTIGRYTSEITNPITKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.12e-13ERF family protein