PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28118.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 660aa MW: 73885.7 Da PI: 6.8777

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73	3.6e-23	135	235	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+kvlt sd++++g +++ +k+a+e+ +++++ ++l+ +d+++ +W +k+i+r++++r++lt+GW+ Fv+a++L +gD++vF + +++el PHU28118.1 135 FCKVLTASDTSTHGGFSVLRKHANEClppldmnQQIPT--QELIAKDLHNVEWHFKHIFRGQPRRHLLTTGWSTFVSAKRLVAGDSFVFL--RGENGEL 229 99**************************97544444..48**********************************************..4499999 PP EEEEE- CS B3 93 vvkvfr 98 +v+v r PHU28118.1 230 RVGVKR 235 999866 PP
2	Auxin_resp	95.6	7.6e-32	261	340	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F v+Y+Pr+ ++F v v+k+++a+k+ +svG+Rfkm+fe+e+ +err++Gt+vgv dl++ +W++SkWrsLk PHU28118.1 261 ASHAVTTHTMFVVYYKPRT--TQFLVGVNKYLEAVKRGYSVGTRFKMQFESEENPERRYMGTIVGVDDLSS-EWKHSKWRSLK 340 789*************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MANKNNGCCK TQQQRKVSPQ VSGRDELYNE LWKLCAGQLV DVPKDGERVF YFPQGHMEQL 60 ETSMNQEMNL RVPSSFSLKP NILCRVIHIH FLAEEDTDEL YAQITLMPVA PDEAPEPNRP 120 EPPPPEPARP KVHSFCKVLT ASDTSTHGGF SVLRKHANEC LPPLDMNQQI PTQELIAKDL 180 HNVEWHFKHI FRGQPRRHLL TTGWSTFVSA KRLVAGDSFV FLRGENGELR VGVKRLGRQQ 240 SSMPSSVMSR QSMHLGVLAT ASHAVTTHTM FVVYYKPRTT QFLVGVNKYL EAVKRGYSVG 300 TRFKMQFESE ENPERRYMGT IVGVDDLSSE WKHSKWRSLK VQWDEPASIL RPDRVSPWEI 360 EPYVSPFPDP LIHSIAGKNK RHRLHTDIKI SEPSSSIVSA IWNPSIDSPQ FNTSGINNST 420 STLASHAEGG WPLAHLNALS SMLVDEAEDS KSASALSGFP SVLTPQYGLG TNQPIVGSAD 480 ERKCDNVTTC RLFGIDLKSS SIGTNEAPLQ QPATISCGSA EKAPPNTVPA GDSDQNSDLS 540 IDLKDQISHL QVLLKEVQSK PSCSTRTRTK VQMQGVAVGR AVDLTKLKGY DELTKELEEM 600 FEIQGELHSR NKWDIVFTDD EGDMMLMADY PWQDFCNVVR RIFICSTQDM KKLTLSRADS

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MANKNNGCCK TQQQRKVSPQ VSGRDELYNE LWKLCAGQLV DVPKDGERVF YFPQGHMEQL  60
ETSMNQEMNL RVPSSFSLKP NILCRVIHIH FLAEEDTDEL YAQITLMPVA PDEAPEPNRP  120
EPPPPEPARP KVHSFCKVLT ASDTSTHGGF SVLRKHANEC LPPLDMNQQI PTQELIAKDL  180
HNVEWHFKHI FRGQPRRHLL TTGWSTFVSA KRLVAGDSFV FLRGENGELR VGVKRLGRQQ  240
SSMPSSVMSR QSMHLGVLAT ASHAVTTHTM FVVYYKPRTT QFLVGVNKYL EAVKRGYSVG  300
TRFKMQFESE ENPERRYMGT IVGVDDLSSE WKHSKWRSLK VQWDEPASIL RPDRVSPWEI  360
EPYVSPFPDP LIHSIAGKNK RHRLHTDIKI SEPSSSIVSA IWNPSIDSPQ FNTSGINNST  420
STLASHAEGG WPLAHLNALS SMLVDEAEDS KSASALSGFP SVLTPQYGLG TNQPIVGSAD  480
ERKCDNVTTC RLFGIDLKSS SIGTNEAPLQ QPATISCGSA EKAPPNTVPA GDSDQNSDLS  540
IDLKDQISHL QVLLKEVQSK PSCSTRTRTK VQMQGVAVGR AVDLTKLKGY DELTKELEEM  600
FEIQGELHSR NKWDIVFTDD EGDMMLMADY PWQDFCNVVR RIFICSTQDM KKLTLSRADS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein