PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28077.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 572aa MW: 65411.6 Da PI: 10.0155

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.3	1.4e-11	26	74	4	56
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 GVr+ k +gr++ eIrdp +r k+++lg+f+ta+eA +a+ + ++e+e PHU28077.1 26 VGVRRQK-NGRYAGEIRDP----IRhKKVWLGTFDTAQEASQAYLSKKSEFENE 74 59888.8*****7....357****************9998888875 PP
2	AP2	30	1.3e-09	92	139	2	52
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ++ GV+ + k+g++ + Ir p ++ r++lg+f+ aeeA +a+ +++ PHU28077.1 92 RVVGVHKRNKQGKYNSAIRNP----ITeERIWLGSFDNAEEASQAYQSKKLE 139 799***************7....347***************9776665 PP
3	AP2	26.8	1.3e-08	216	262	3	54
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 + G+ + k +gr++A I d + + +++ g+f+t eeA +a+ + ++e PHU28077.1 216 FVGIKRQK-NGRYAAVITDrV-----KHKIWFGTFDTIEEASRAYLSKKFEFE 262 78998777.8*******55.....69***************98888876 PP
4	AP2	25.2	4.1e-08	307	354	3	54
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 + G+r++k +gr++A I dp +r k + lg+f+t +eA +a+ + ++e PHU28077.1 307 VNGIRRRK-SGRYAAVITDP----IRhKEVCLGTFDTIDEASQAYKSKKSEFE 354 569999.7*****7....357****************88776665 PP
5	AP2	22	4.1e-07	403	440	5	45
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 G + k+ gr+ +eI +p + k+ +lg+fgtaeeA a PHU28077.1 403 GAYKSKTAGRYTSEIIHPI----TkKKTWLGTFGTAEEASHA 440 5578899********72....36************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MDTKLVVNVK QMKERESSKA KMISLVGVRR QKNGRYAGEI RDPIRHKKVW LGTFDTAQEA 60 SQAYLSKKSE FENEKLSHRG NEKSKRIRET TRVVGVHKRN KQGKYNSAIR NPITEERIWL 120 GSFDNAEEAS QAYQSKKLEF NAMLQRCSTN KDGHSEQGNE NVNGEVFETD SCNGGTDRRI 180 DPREIGTTEE AKEGSKVFNS CLISNVRVNP KDKTTFVGIK RQKNGRYAAV ITDRVKHKIW 240 FGTFDTIEEA SRAYLSKKFE FEKLRQQGKT ENNLKKNCDQ IQHPESTSVV EILNTATSCD 300 LKARRSVNGI RRRKSGRYAA VITDPIRHKE VCLGTFDTID EASQAYKSKK SEFEKLRQGN 360 KENKRKKNCD QIQRPLVASL DTASEYGRAK RINNHNTTPH MIGAYKSKTA GRYTSEIIHP 420 ITKKKTWLGT FGTAEEASHA FQSKKLEFQK LVKAKKQQCM QRKSEKLVNF KQGTAEETFH 480 VKQSKVFDLQ SSKEVELQSD TPTDSRARKN QEGQEDDEDL WKGKWVQLPD NTEVMFSSKL 540 GLPIIDNYGY LLGEFSTLDD LSICVTEDDN QM

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MDTKLVVNVK QMKERESSKA KMISLVGVRR QKNGRYAGEI RDPIRHKKVW LGTFDTAQEA  60
SQAYLSKKSE FENEKLSHRG NEKSKRIRET TRVVGVHKRN KQGKYNSAIR NPITEERIWL  120
GSFDNAEEAS QAYQSKKLEF NAMLQRCSTN KDGHSEQGNE NVNGEVFETD SCNGGTDRRI  180
DPREIGTTEE AKEGSKVFNS CLISNVRVNP KDKTTFVGIK RQKNGRYAAV ITDRVKHKIW  240
FGTFDTIEEA SRAYLSKKFE FEKLRQQGKT ENNLKKNCDQ IQHPESTSVV EILNTATSCD  300
LKARRSVNGI RRRKSGRYAA VITDPIRHKE VCLGTFDTID EASQAYKSKK SEFEKLRQGN  360
KENKRKKNCD QIQRPLVASL DTASEYGRAK RINNHNTTPH MIGAYKSKTA GRYTSEIIHP  420
ITKKKTWLGT FGTAEEASHA FQSKKLEFQK LVKAKKQQCM QRKSEKLVNF KQGTAEETFH  480
VKQSKVFDLQ SSKEVELQSD TPTDSRARKN QEGQEDDEDL WKGKWVQLPD NTEVMFSSKL  540
GLPIIDNYGY LLGEFSTLDD LSICVTEDDN QM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	1e-13	ERF family protein