PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28076.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 501aa MW: 57336.4 Da PI: 9.8138

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.2	1e-08	184	232	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +G+r +gr+ A I d + +rk+++lg+f+t eeA +a+ + +l++ PHU28076.1 184 LRGIRKQQ-NGRYGAVITD----QiRRKQVRLGTFDTVEEASQAYFSKKSELKN 232 599777.8*****....4456****************998888876 PP
2	AP2	30.4	9.8e-10	258	303	5	54
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 G+r++k +gr+ A I dp + k ++lg+f+t e+A +a+ + + ++e PHU28076.1 258 GIRRRK-SGRYSAKITDPI----KhKEVYLGTFDTIEQASQAYFNKKSEFE 303 9999.7*****72....46****************98877766 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MATKTDQRIL FTEEKEEENS WKKPKTTQDS EIFVDTVKST THSCLMANNG YGRNGRYADE 60 CNTKRSLTGI WRQKNGRYAA VFTDPITRGI PYKSGIPRAI WNPPLTRRGS LQPEYATRCG 120 YEKRWNWFSR NNTYCCWGFE GKPSEKEPES SEEDSCLMAD VQGTESTNER NVTASSLPTA 180 KRCLRGIRKQ QNGRYGAVIT DQIRRKQVRL GTFDTVEEAS QAYFSKKSEL KNEKLNQQCT 240 NMHTRSEQGP KDEISLIGIR RRKSGRYSAK ITDPIKHKEV YLGTFDTIEQ ASQAYFNKKS 300 EFEKLRQQGQ TENIRKKNCD QIQQPESPTV VASLDTAASA RGRDKRTDSH ITTPHMIGAY 360 KSKTAGRYTS EIIHPITKKK IWLGTFVTAE EASHAFQSKK LEFQKLVKEK KQQCTQRKSE 420 KLVNFKQGTA EETFHVNQSK KFGLQSSKEV ELQSDVPTDS SAGKKQEGQE DDEDLWMGKW 480 VQLPGDREVM FSLILGLPNH R

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MATKTDQRIL FTEEKEEENS WKKPKTTQDS EIFVDTVKST THSCLMANNG YGRNGRYADE  60
CNTKRSLTGI WRQKNGRYAA VFTDPITRGI PYKSGIPRAI WNPPLTRRGS LQPEYATRCG  120
YEKRWNWFSR NNTYCCWGFE GKPSEKEPES SEEDSCLMAD VQGTESTNER NVTASSLPTA  180
KRCLRGIRKQ QNGRYGAVIT DQIRRKQVRL GTFDTVEEAS QAYFSKKSEL KNEKLNQQCT  240
NMHTRSEQGP KDEISLIGIR RRKSGRYSAK ITDPIKHKEV YLGTFDTIEQ ASQAYFNKKS  300
EFEKLRQQGQ TENIRKKNCD QIQQPESPTV VASLDTAASA RGRDKRTDSH ITTPHMIGAY  360
KSKTAGRYTS EIIHPITKKK IWLGTFVTAE EASHAFQSKK LEFQKLVKEK KQQCTQRKSE  420
KLVNFKQGTA EETFHVNQSK KFGLQSSKEV ELQSDVPTDS SAGKKQEGQE DDEDLWMGKW  480
VQLPGDREVM FSLILGLPNH R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68550.1	7e-11	ERF family protein