PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU28075.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 719aa MW: 80893.1 Da PI: 9.7211

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU28075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.1	5.3e-09	82	128	5	55
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 G+ k +gr+vA+I dp + k++++g f+t eeA +a+ + ++e+ PHU28075.1 82 GIKKQK-NGRYVARITDPI----KhKQVHVGVFDTIEEASQAYLSKKSEFEN 128 777666.8*******72....46****************988877765 PP
2	AP2	26	2.3e-08	160	199	3	45
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 + G +++kk+gr+ + I p ++ k++slg+f+taeeA +a PHU28075.1 160 IIGAYRRKKTGRYYSKITNP----ITkKKISLGTFDTAEEASRA 199 66779*******998886....246*************98 PP
3	AP2	24.9	5e-08	413	451	5	47
AP2 5 GVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47 G+r++k +gr++A I dp +r k + lg+f+t eeA +a+ PHU28075.1 413 GIRRRK-SGRYAAVITDP----IRhKEVCLGTFDTIEEASQAYF 451 9999.7*****7....357***************95 PP
4	AP2	34.1	7e-11	509	549	2	45
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 ++ GV+ k+ g++ +eIrdp + k+++lg+f+taeeA a PHU28075.1 509 HVIGVYKSKSLGKFTSEIRDPI----TkKTIWLGTFDTAEEASHA 549 789***************72....36************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MAMKTDGIAL FTDEEEETCY KKQKTRKVSE IFVDKVNSTN HSCLMSIGKK TGLMTKVRGA 60 ESCDECNVST CCDSKAKISL TGIKKQKNGR YVARITDPIK HKQVHVGVFD TIEEASQAYL 120 SKKSEFENKW KKNFEQPESP SVSASGRDRR IDSRERTTRI IGAYRRKKTG RYYSKITNPI 180 TKKKISLGTF DTAEEASRAF QSKKLEFQKL VDVKQEQCAN KHSRSNQDGT TLSGGLVNVK 240 RERENLICHE RFQHGGEAFR VCQSKNKQAF SCNTTTSWNT KAKRSFVGIK RQMDGGYAAV 300 ITDRVKHRKV WFDTFDTIEE ASQAYSSKKS EFEELSQQGN KENKSMKNCD QIQQPESSSV 360 VSRREKRIDS HVKEAGSSKA RSCLMTNVCG GESPDERSIT TNCDPKAKIS LIGIRRRKSG 420 RYAAVITDPI RHKEVCLGTF DTIEEASQAY FSKKSEVDKL RQQGKTENKL KKNCDPIQQP 480 ESSSVMASLD TAGGSGRGKR IESHKRTTHV IGVYKSKSLG KFTSEIRDPI TKKTIWLGTF 540 DTAEEASHAF QSKKLEFQKL VQAKQKQCIH KQTHSKENRK SEKSVHAKQE HENLNCGLES 600 VGGPRIDFPM SNTSNGGTDR RINPHETGIA EDAFHACLSE KFYSQSSKEV ELQSNMSTDS 660 CAGKNQQGQE DDDKDLWMGK WVQLGDRTVM FSLKLGLPII DNYGSLLGEF SSLDDLSII

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MAMKTDGIAL FTDEEEETCY KKQKTRKVSE IFVDKVNSTN HSCLMSIGKK TGLMTKVRGA  60
ESCDECNVST CCDSKAKISL TGIKKQKNGR YVARITDPIK HKQVHVGVFD TIEEASQAYL  120
SKKSEFENKW KKNFEQPESP SVSASGRDRR IDSRERTTRI IGAYRRKKTG RYYSKITNPI  180
TKKKISLGTF DTAEEASRAF QSKKLEFQKL VDVKQEQCAN KHSRSNQDGT TLSGGLVNVK  240
RERENLICHE RFQHGGEAFR VCQSKNKQAF SCNTTTSWNT KAKRSFVGIK RQMDGGYAAV  300
ITDRVKHRKV WFDTFDTIEE ASQAYSSKKS EFEELSQQGN KENKSMKNCD QIQQPESSSV  360
VSRREKRIDS HVKEAGSSKA RSCLMTNVCG GESPDERSIT TNCDPKAKIS LIGIRRRKSG  420
RYAAVITDPI RHKEVCLGTF DTIEEASQAY FSKKSEVDKL RQQGKTENKL KKNCDPIQQP  480
ESSSVMASLD TAGGSGRGKR IESHKRTTHV IGVYKSKSLG KFTSEIRDPI TKKTIWLGTF  540
DTAEEASHAF QSKKLEFQKL VQAKQKQCIH KQTHSKENRK SEKSVHAKQE HENLNCGLES  600
VGGPRIDFPM SNTSNGGTDR RINPHETGIA EDAFHACLSE KFYSQSSKEV ELQSNMSTDS  660
CAGKNQQGQE DDDKDLWMGK WVQLGDRTVM FSLKLGLPII DNYGSLLGEF SSLDDLSII

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28370.1	3e-11	ERF family protein