PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27983.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 24414.5 Da PI: 4.8257

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	29	82	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 R++f++eq++ Le++F ++ p +++++LAk+lgL+ rqV +WFqN+Ra+ k PHU27983.1 29 MRRRFNDEQIKSLENMFSTESRPELRTKQQLAKSLGLQPRQVAIWFQNKRARSK 82 699*************************************************99 PP
2	HD-ZIP_I/II	101.1	9.5e-33	30	120	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +rr+++eq+k+LE++F++e++ e + K++la++Lglqprqva+WFqn+RAR k+kqlE +y++L+ +yd+l ++ e L+ke+e+L +l++ PHU27983.1 30 RRRFNDEQIKSLENMFSTESRPELRTKQQLAKSLGLQPRQVAIWFQNKRARSKSKQLELEYRMLQMSYDNLGSKYELLKKEHESLLLQLQR 120 79***********************************************************************************988875 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MSMGEMPPTN SDIWGQSMSS SIKKCKDSMR RRFNDEQIKS LENMFSTESR PELRTKQQLA 60 KSLGLQPRQV AIWFQNKRAR SKSKQLELEY RMLQMSYDNL GSKYELLKKE HESLLLQLQR 120 LRKLTEKGGT EEIQKDGIKS ETEQFAPENC SAEFGLPLCE DNRGIDYLGP ESDILDMAQI 180 ADGLSEIENE YNYESRTFLD NSGCTSPLWE F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	1e-29	HD-ZIP family protein