PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27827.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 372aa MW: 42421.7 Da PI: 4.8631

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.2	2.6e-17	170	260	1	87
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+l +sdv++++r+v+pkk ae++ + +e++ +t++d +g +W+++++y +++s++yvl+ ++ +F + ++L++gD + ++++++ PHU27827.1 170 FDKQLQNSDVSSLRRIVVPKKAAERYlpalE--IKEGFPITMNDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFIQTHELRQGDYFALHYNDQ 260 89************************544..557788****9*****888899999999.****************998753 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MAMMDITEAY GVMADGNATL VGDTHTTSNM MNNVAPFPPI PIPIPISIQQ QQQQQQQQPH 60 THTHTTKGSR SQRRRRSSLN FASLDFPSFL SHDGYLVSLY GLEQSSLILL LQSIRFELAS 120 IRFELAVRPK HSLSWYQSLF FTLQSIRFEL AVSVASVNKV LEPTGFKFLF DKQLQNSDVS 180 SLRRIVVPKK AAERYLPALE IKEGFPITMN DMDGIHVWSF RYRYWPNNSS RMYVLENTGD 240 FIQTHELRQG DYFALHYNDQ KQIYGIEARK AGSGPVFRGY EAEDVILTDY AQATDDGNGN 300 GVLKNEAEMD MSSFYFPAMD NEMDMSFIYD TSFWNEPAFD FVGGPMTYYS TNVNPTPSFG 360 SIEDSFPVDD FF

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MAMMDITEAY GVMADGNATL VGDTHTTSNM MNNVAPFPPI PIPIPISIQQ QQQQQQQQPH  60
THTHTTKGSR SQRRRRSSLN FASLDFPSFL SHDGYLVSLY GLEQSSLILL LQSIRFELAS  120
IRFELAVRPK HSLSWYQSLF FTLQSIRFEL AVSVASVNKV LEPTGFKFLF DKQLQNSDVS  180
SLRRIVVPKK AAERYLPALE IKEGFPITMN DMDGIHVWSF RYRYWPNNSS RMYVLENTGD  240
FIQTHELRQG DYFALHYNDQ KQIYGIEARK AGSGPVFRGY EAEDVILTDY AQATDDGNGN  300
GVLKNEAEMD MSSFYFPAMD NEMDMSFIYD TSFWNEPAFD FVGGPMTYYS TNVNPTPSFG  360
SIEDSFPVDD FF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26790.1	5e-49	B3 family protein