PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27763.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 386aa MW: 42893.8 Da PI: 5.0009

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27763.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.3	5.3e-31	54	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 lp+G++F+P+ elv e+L++k+ + + + +i+++d i++++P++Lp +k++ ++++fF + ++yatgkrk+r+ ++ PHU27763.1 54 LPVGVKFDPSGAELV-EHLQAKCGMGNseqH---KfideFIPTLDvyegICYTHPEKLP-GAKKDGSSIHFFYRITNAYATGKRKRRKihdennlmNEH 147 799**********.99987774442...322224666655555999***.556778899**************867777776669 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k +++ +g ++g+kk++v+y +++ +k ekt+Wvmh+y+l PHU27763.1 148 VRWHKTGKTKIIVE-NGLQKGCKKVMVLYqtTKKGSKQEKTNWVMHQYHL 196 99**999999.999*******5435677888*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
SRSWLIDGRG LASKVKNAGA PAALQIKDCG AKRQCPNCHY CIDNNDVSHE WPGLPVGVKF 60 DPSGAELVEH LQAKCGMGNS EQHKFIDEFI PTLDVYEGIC YTHPEKLPGA KKDGSSIHFF 120 YRITNAYATG KRKRRKIHDE NNLMNEHVRW HKTGKTKIIV ENGLQKGCKK VMVLYQTTKK 180 GSKQEKTNWV MHQYHLGTDE EEKEGEYVVS KIFYQQPKQS VKANDSLDNE EASVGANQTG 240 PTTPKTVIPD PPRAGETPSC DDIVDDPFPS SPYQEVEVAN EPGQTSDAKI KCEMEYSICL 300 AGESQAADDV DISLLCDEPN NYSFLDSLGP SSDYTHNPCH LPQGNGSTTC GIPELDNLEL 360 DTPPDFQLSD LPFGSQENIF SWLDRL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

SRSWLIDGRG LASKVKNAGA PAALQIKDCG AKRQCPNCHY CIDNNDVSHE WPGLPVGVKF  60
DPSGAELVEH LQAKCGMGNS EQHKFIDEFI PTLDVYEGIC YTHPEKLPGA KKDGSSIHFF  120
YRITNAYATG KRKRRKIHDE NNLMNEHVRW HKTGKTKIIV ENGLQKGCKK VMVLYQTTKK  180
GSKQEKTNWV MHQYHLGTDE EEKEGEYVVS KIFYQQPKQS VKANDSLDNE EASVGANQTG  240
PTTPKTVIPD PPRAGETPSC DDIVDDPFPS SPYQEVEVAN EPGQTSDAKI KCEMEYSICL  300
AGESQAADDV DISLLCDEPN NYSFLDSLGP SSDYTHNPCH LPQGNGSTTC GIPELDNLEL  360
DTPPDFQLSD LPFGSQENIF SWLDRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	KRKRRK
2	131	157	KRKRRKIHDENNLMNEHVRWHKTGKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01600.1	7e-93	NAC family protein