PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU27752.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 470aa    MW: 53817.4 Da    PI: 5.0333
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU27752.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.91.1e-104984683374
        GRAS   3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +lL++cA+a+++ d   +a++lL+++++++sp gd +qRla+yf+ AL+arla+ ++ +yk ++ ++ts    ++ l+a+ l+   +P+ ++ + +   
  PHU27752.1  98 SLLISCAQAIAAADDCpNATELLKQIRQRSSPFGDGNQRLAHYFADALEARLAGIGNDIYKVISNRKTS---AADFLKAYDLYLASCPFRRIPNYVSSM 193
                 79********9965555***********************************************99999...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 +I+  +++++r+HiiDf+i +G+QWpaL+q +a +++gpp+lRiTg++ p++g   +e++eetg+rLa +Ae++++ fe+++ +ak++e++ le+L ++
  PHU27752.1 194 TIMSKADNATRIHIIDFGILYGFQWPALIQRIAFKEAGPPKLRITGIEFPQPGfrPAERIEETGRRLAIYAERFNILFEYQA-IAKKWETILLEDLMLD 291
                 ****************************************************9*****************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +++ l+Vn+ ++ ++l+de+   es ++ vL+l+++++P+++++   +  ++++sF++rf e l+y+salfd+l + +pre  er  +Er ++gre+ n
  PHU27752.1 292 KNDFLVVNCLYRCKNLHDETELEESSKTIVLNLIRKINPDIFIHGIVNGAYSAPSFVTRFHEVLSYFSALFDMLGTVVPREIPERLLIERDIFGREALN 390
                 *******************999999************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 v+aceg er+er et+++W+ r  +a F+++p++ +++k     +r  + + + ++ee+++l+lgWk+r ++++S+W+
  PHU27752.1 391 VIACEGLERVERPETYKQWQVRNLRAMFTQIPFEREIMKRSIEAVRSSYHQDFVIDEEDQWLLLGWKGRVIYALSCWT 468
                 ****************************************999999999888*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MDPKFNTSVN EFHPEDQSIS SSSDLLKSNE PRCDSPRPEN SELEAVYTES TVCSEEFDRV  60
LLLGTGKKWD ELAAYRESMK NGASMETSKN DDVVDLPSLL ISCAQAIAAA DDCPNATELL  120
KQIRQRSSPF GDGNQRLAHY FADALEARLA GIGNDIYKVI SNRKTSAADF LKAYDLYLAS  180
CPFRRIPNYV SSMTIMSKAD NATRIHIIDF GILYGFQWPA LIQRIAFKEA GPPKLRITGI  240
EFPQPGFRPA ERIEETGRRL AIYAERFNIL FEYQAIAKKW ETILLEDLML DKNDFLVVNC  300
LYRCKNLHDE TELEESSKTI VLNLIRKINP DIFIHGIVNG AYSAPSFVTR FHEVLSYFSA  360
LFDMLGTVVP REIPERLLIE RDIFGREALN VIACEGLERV ERPETYKQWQ VRNLRAMFTQ  420
IPFEREIMKR SIEAVRSSYH QDFVIDEEDQ WLLLGWKGRV IYALSCWTPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-176GRAS family protein