PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27751.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 569aa MW: 64057.8 Da PI: 6.4354

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27751.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	34	8.1e-11	7	103	1	95
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyG.avgvilklqqqleqlkaela 95 +C aC v rr +C ++C +p+fp + k+ + FG+ ++ + +++p e+r++ ++ l+ A + +G +++ +++++q + q +a ++ PHU27751.1 7 SCGACEVERRpNCGENCNWRPVFPPGGADKYTLLINYFGRPRLKREFRQTPVEQRPAHFEDLFQDALLELAHRNNGgVARRFRAMEQTIVQQQAYIQ 103 6*************************************************************99999877666555155677888888888888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MAAPIISCGA CEVERRPNCG ENCNWRPVFP PGGADKYTLL INYFGRPRLK REFRQTPVEQ 60 RPAHFEDLFQ DALLELAHRN NGGVARRFRA MEQTIVQQQA YIQFLLGQIP NNLQLQLQQV 120 NPQLNLNPPH PIGLQNQQAG LGQQVGIFQQ VNPQLNLNPP HHIGLQKQEG MNEHVWPPND 180 QFGIALQDQQ PGIGQQDGVF QQVNPQLNLN PPHHIGLQNQ QAGLGQQVGI FQQVNPQLNL 240 NPPHHIGLQK QEGMNEHVWP PNDQFGIALQ DQQPGIGQQD GVFQQVNPQL NLNPPHHIGL 300 QNQQAGLGQQ VGIFQQVNPQ LNLNPPHHIG LQKQEGMNEH VWPPNDQFGI ALQDQQPGIG 360 QQDGVFQQVN PQLNLNPPHP IGLQQQDGKA PEVAPRTNPE SKCHRCGGKG HWERACLTPK 420 HLVKLYQASL KRSENDAETN FLLEDNIEPM DLDVSDYLAN PEEQMNTYVV SNRLDQCSGI 480 SNNLQNGQRV FSEFKETLHM NVRIHQPRSV YKTMNLALEY EGKHGPKQSS KLMQEENVHF 540 PSFRLEDNTT FQGKCTDKAA LLACENNVT

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MAAPIISCGA CEVERRPNCG ENCNWRPVFP PGGADKYTLL INYFGRPRLK REFRQTPVEQ  60
RPAHFEDLFQ DALLELAHRN NGGVARRFRA MEQTIVQQQA YIQFLLGQIP NNLQLQLQQV  120
NPQLNLNPPH PIGLQNQQAG LGQQVGIFQQ VNPQLNLNPP HHIGLQKQEG MNEHVWPPND  180
QFGIALQDQQ PGIGQQDGVF QQVNPQLNLN PPHHIGLQNQ QAGLGQQVGI FQQVNPQLNL  240
NPPHHIGLQK QEGMNEHVWP PNDQFGIALQ DQQPGIGQQD GVFQQVNPQL NLNPPHHIGL  300
QNQQAGLGQQ VGIFQQVNPQ LNLNPPHHIG LQKQEGMNEH VWPPNDQFGI ALQDQQPGIG  360
QQDGVFQQVN PQLNLNPPHP IGLQQQDGKA PEVAPRTNPE SKCHRCGGKG HWERACLTPK  420
HLVKLYQASL KRSENDAETN FLLEDNIEPM DLDVSDYLAN PEEQMNTYVV SNRLDQCSGI  480
SNNLQNGQRV FSEFKETLHM NVRIHQPRSV YKTMNLALEY EGKHGPKQSS KLMQEENVHF  540
PSFRLEDNTT FQGKCTDKAA LLACENNVT