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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PHU27709.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 310aa MW: 35248.1 Da PI: 6.083 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 57.8 | 1.8e-18 | 100 | 153 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
PHU27709.1 100 KKRRLNMEQVKALERSFEMASKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 153
456899***********************************************9 PP
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| 2 | HD-ZIP_I/II | 131.8 | 2.5e-42 | 99 | 190 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ eqvk+LE+sFe+ +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+yd+lk++n++L+++++eL++el+
PHU27709.1 99 EKKRRLNMEQVKALERSFEMASKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEILKRHYDSLKADNDALKAQNKELHSELQ 190
69***************************************************************************************997 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 310 aa Download sequence |
MISDTTGIMA FVPSTPDISL NFQPLHQDNN NNHHLPSTSP KLFPSPCLPH QDFNHGLPSM 60 LMRRSMSFSG AERCDNHQDL RVDDNEMSDD DGSSQLLGEK KRRLNMEQVK ALERSFEMAS 120 KLEPERKIQL ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YEILKRHYDS LKADNDALKA 180 QNKELHSELQ LLNVKNRESS GGGGTPIMIN LNKENEGSWS NNGSDDNNSI DVNLGTATTS 240 GDSPFYSKNV FPETGPTTLA HFLQSSSRPD LSHCHKIDPT VQDDQGFCNM FTPVDDQTNF 300 WPWPEQQHFN |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 148 | 156 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G15150.1 | 6e-66 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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