PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27663.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 378aa MW: 41986.9 Da PI: 8.1095

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27663.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.4	8.4e-30	135	190	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk +e+prsYY+Ct+ +Cp+kkkve+s d++++eitY+g+Hnh PHU27663.1 135 DGYNWRKYGQKKVKATECPRSYYKCTHLKCPAKKKVEKSV-DGHITEITYNGRHNHA 190 9*************************************.*************7 PP
2	WRKY	107.1	8.6e-34	301	359	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vkg+++prsYYrCt+agC+v+k+ver+++dpk+v++tYeg+Hnh+ PHU27663.1 301 LDDGYRWRKYGQKAVKGTQHPRSYYRCTFAGCNVRKQVERASTDPKAVITTYEGKHNHD 359 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MNLALAQSPL FMIPSGFSPS GFLNSPGFLS PLQSPFGMSH QQALAHVTAQ AECSSSYMQM 60 QAEDQCSAQV ASAEAALGNE LLTDPKESSL QIKECLQSRL DKKPSDKQGK QFELTEVPQF 120 ENKTSFGAFD KSACDGYNWR KYGQKKVKAT ECPRSYYKCT HLKCPAKKKV EKSVDGHITE 180 ITYNGRHNHA QPTKQRKDGS ALDSTDGSGV QPDISTHDWT VMNSSDGSSP SHSEQVPNQM 240 ASELVKKECD ETKSNLIEVD EGHDEPDAKR TKMAVETLAS SHGTVAESKI ILQTRSEVDI 300 LDDGYRWRKY GQKAVKGTQH PRSYYRCTFA GCNVRKQVER ASTDPKAVIT TYEGKHNHDI 360 PTVIRNRGTR NTAKDTWR

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MNLALAQSPL FMIPSGFSPS GFLNSPGFLS PLQSPFGMSH QQALAHVTAQ AECSSSYMQM  60
QAEDQCSAQV ASAEAALGNE LLTDPKESSL QIKECLQSRL DKKPSDKQGK QFELTEVPQF  120
ENKTSFGAFD KSACDGYNWR KYGQKKVKAT ECPRSYYKCT HLKCPAKKKV EKSVDGHITE  180
ITYNGRHNHA QPTKQRKDGS ALDSTDGSGV QPDISTHDWT VMNSSDGSSP SHSEQVPNQM  240
ASELVKKECD ETKSNLIEVD EGHDEPDAKR TKMAVETLAS SHGTVAESKI ILQTRSEVDI  300
LDDGYRWRKY GQKAVKGTQH PRSYYRCTFA GCNVRKQVER ASTDPKAVIT TYEGKHNHDI  360
PTVIRNRGTR NTAKDTWR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-100	WRKY family protein