PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27619.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

E2F/DP

Protein Properties

Length: 351aa MW: 39218.3 Da PI: 9.294

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27619.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	77.6	1.2e-24	20	85	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++flkl+ ++ ++v l+++a++L v +rRRiYDi+N+Le+++++++k+kn++rw+g PHU27619.1 20 RKDKSLGLLCSNFLKLCDREGVDTVGLDNAADKL---GV--ERRRIYDIVNILESVGVLSRKAKNQYRWNG 85 79***************999********.....****************************98 PP
2	E2F_TDP	69.4	4.3e-22	142	221	1	70
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ + vk+k RR+YDi+NV+ +lnliek + k+ +rw+ PHU27619.1 142 RKEKSLMILAQNFVKLFHCSNVDLISLDKAASALLGDihdpmAVKTKTRRLYDIANVFVSLNLIEKirspdNGKPVFRWI 221 79****************************************************************99999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MSSSVHTEDS QWKNPSIYSR KDKSLGLLCS NFLKLCDREG VDTVGLDNAA DKLGVERRRI 60 YDIVNILESV GVLSRKAKNQ YRWNGYSAIP KAVDLLKKEG LKDLSTASST CHNVSNVVAC 120 NHSDVKETGE GNTCGLHKID NRKEKSLMIL AQNFVKLFHC SNVDLISLDK AASALLGDIH 180 DPMAVKTKTR RLYDIANVFV SLNLIEKIRS PDNGKPVFRW IAWKENRTSG SPAAATSDES 240 MRRTFGTEIT NTIPKRCRDD SSSDLMSNGQ VKRLKVAKDD ELKDKNQISA EQHDERGTKD 300 FVFGPFGPSS LPKSGVSGKE NLKHIQNWED LASKYYPQYQ NKDGIKHIQQ G

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MSSSVHTEDS QWKNPSIYSR KDKSLGLLCS NFLKLCDREG VDTVGLDNAA DKLGVERRRI  60
YDIVNILESV GVLSRKAKNQ YRWNGYSAIP KAVDLLKKEG LKDLSTASST CHNVSNVVAC  120
NHSDVKETGE GNTCGLHKID NRKEKSLMIL AQNFVKLFHC SNVDLISLDK AASALLGDIH  180
DPMAVKTKTR RLYDIANVFV SLNLIEKIRS PDNGKPVFRW IAWKENRTSG SPAAATSDES  240
MRRTFGTEIT NTIPKRCRDD SSSDLMSNGQ VKRLKVAKDD ELKDKNQISA EQHDERGTKD  300
FVFGPFGPSS LPKSGVSGKE NLKHIQNWED LASKYYPQYQ NKDGIKHIQQ G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	3e-87	E2F/DP family protein