PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27297.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 938aa MW: 103920 Da PI: 8.1236

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.5	1.2e-11	613	669	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a++ a++k++g PHU27297.1 613 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEDKAARAYDLAALKYWG 669 78*****************87776664446655.7799************98 PP
2	AP2	45	2.6e-14	714	763	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PHU27297.1 714 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 763 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence
MGDQKVVLVT GCAKGGIGFE YCKAFAVQNC RVFASDVSPR MSDMLDLQAD KIETLELDVA 60 SDESVESAVN SIISKCGRID ILINNAGIGC TGPLAELPLD EIRKAYEINA LGQLRMIQQV 120 VPHMASRHSG IIVNVASVVG KVPTPWAGSY CATKAAVFSM SHTLRVELSP FDINVIIVVP 180 GAIRSSFGNN NVERLQNYEW KLYKDFKEAI IERAKASQGS KATDASVFAR HVAKKVLSPK 240 PPKVIEFGHM IGLFSLLSWS PLWARDLFLS TRFKLNRKIL KGINGLSSNK GRGALYIQMK 300 SLSNDDSSNN NNHWLGFSLS PHINSLEGPL ADQHHNTQPG SSDVQSSVPI RFSPTHLNYP 360 GMFFESDNAG LYSSLSAMPL KSDGSLCIMK GFNRSQQPQG MVSSTPKLED FFGDAAMGSH 420 HYEGCNRGGM AHSLHNIYYN QHQENETTNS QDFLNHIQEN TRQQQQQQQH YPDFSAFRGH 480 ELYQSTEQGK AECSNLQVPT MTNEEMSGMN NWVSRNYQNP TGHALEQNMI GCMADNGAET 540 ASVGAMTYGD FKSLSLSMSP GSQSSCITGT QQISPAVTEC IAMETKKRGP EKVNHQKQIV 600 HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRQGGY DMEDKAARAY 660 DLAALKYWGP STHINFPLEN YQQELEEMKN MTRQEYVAHL RRKSSGFSRG ASMYRGVTRH 720 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DISRYDVERI 780 MASNTLLAGE LARRNKDTET SKEICNQNLI ANASHHGEVN IQNKEENGNA VDWTMTLYQS 840 SSAGVDTNTM NSTPLQGQMD ESARMNTHLS NASSLVTSLG SSREVSPTKN NGHSMHNFAM 900 MPQSAPKLIP TPATNITSWI SSAQLRPNVP VFAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence

MGDQKVVLVT GCAKGGIGFE YCKAFAVQNC RVFASDVSPR MSDMLDLQAD KIETLELDVA  60
SDESVESAVN SIISKCGRID ILINNAGIGC TGPLAELPLD EIRKAYEINA LGQLRMIQQV  120
VPHMASRHSG IIVNVASVVG KVPTPWAGSY CATKAAVFSM SHTLRVELSP FDINVIIVVP  180
GAIRSSFGNN NVERLQNYEW KLYKDFKEAI IERAKASQGS KATDASVFAR HVAKKVLSPK  240
PPKVIEFGHM IGLFSLLSWS PLWARDLFLS TRFKLNRKIL KGINGLSSNK GRGALYIQMK  300
SLSNDDSSNN NNHWLGFSLS PHINSLEGPL ADQHHNTQPG SSDVQSSVPI RFSPTHLNYP  360
GMFFESDNAG LYSSLSAMPL KSDGSLCIMK GFNRSQQPQG MVSSTPKLED FFGDAAMGSH  420
HYEGCNRGGM AHSLHNIYYN QHQENETTNS QDFLNHIQEN TRQQQQQQQH YPDFSAFRGH  480
ELYQSTEQGK AECSNLQVPT MTNEEMSGMN NWVSRNYQNP TGHALEQNMI GCMADNGAET  540
ASVGAMTYGD FKSLSLSMSP GSQSSCITGT QQISPAVTEC IAMETKKRGP EKVNHQKQIV  600
HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRQGGY DMEDKAARAY  660
DLAALKYWGP STHINFPLEN YQQELEEMKN MTRQEYVAHL RRKSSGFSRG ASMYRGVTRH  720
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF DISRYDVERI  780
MASNTLLAGE LARRNKDTET SKEICNQNLI ANASHHGEVN IQNKEENGNA VDWTMTLYQS  840
SSAGVDTNTM NSTPLQGQMD ESARMNTHLS NASSLVTSLG SSREVSPTKN NGHSMHNFAM  900
MPQSAPKLIP TPATNITSWI SSAQLRPNVP VFAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-144	AP2 family protein