PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27270.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 364aa MW: 40691.5 Da PI: 5.9302

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27270.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.6	1.2e-14	177	224	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+r+ + f +L +l+P + kKl+Ka+iL A++YIk+L+ PHU27270.1 177 QDHVLAERKRRERLTQYFVTLSTLIPDL-----KKLDKASILGDAIKYIKQLE 224 56999*********************.....9***************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MDISSATFWS EMDIMNMNDL QYIDHGQTMT TFDDLPFNNN PFTPSIYDDN IQASQSAGIF 60 EVNPGFRSST TAIYQNTYFS SPSASPPPSS SPAVISFSNS NSPSATTSTT AARNYFENLN 120 TAVKTEVPSG TTINFSSSSN ISMDSDFEDS QHLFQAMGFG AGEAKKTSNS RTPLQAQDHV 180 LAERKRRERL TQYFVTLSTL IPDLKKLDKA SILGDAIKYI KQLEEQVKSL EEETKKYNEE 240 PVAAVKRPRV LKSYDNSTIS NENSNKSVPN IEVRANSDGN VLIRIYCKKQ ARIVKEIFSQ 300 VEMLHLTITS SSVIPFGYNT THITIVAQMD HQFKNMTTEY VANRIRLSIM KLINSHEEAN 360 YPVA

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MDISSATFWS EMDIMNMNDL QYIDHGQTMT TFDDLPFNNN PFTPSIYDDN IQASQSAGIF  60
EVNPGFRSST TAIYQNTYFS SPSASPPPSS SPAVISFSNS NSPSATTSTT AARNYFENLN  120
TAVKTEVPSG TTINFSSSSN ISMDSDFEDS QHLFQAMGFG AGEAKKTSNS RTPLQAQDHV  180
LAERKRRERL TQYFVTLSTL IPDLKKLDKA SILGDAIKYI KQLEEQVKSL EEETKKYNEE  240
PVAAVKRPRV LKSYDNSTIS NENSNKSVPN IEVRANSDGN VLIRIYCKKQ ARIVKEIFSQ  300
VEMLHLTITS SSVIPFGYNT THITIVAQMD HQFKNMTTEY VANRIRLSIM KLINSHEEAN  360
YPVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	188	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-42	bHLH family protein