PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27237.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 407aa MW: 46141.9 Da PI: 7.6776

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27237.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.8e-17	156	205	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PHU27237.1 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205 78*****************......55**********************997 PP
2	AP2	44.2	4.7e-14	248	298	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g PHU27237.1 248 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 298 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MWDLNDSPDR RRPDFDESEE AYSSQVHRVG SFSNSSSSAV ATDDVSEEEV GVRSGKKKRS 60 TKPSKIFGFS VLGPDDEEEE KPVTRQFFPV DEPETGCVTN DSPNFPRAHW VGVKFYQNEP 120 LVNTGLAKPI DMAKQQQQQQ PPPIKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFSLEDYESD LKQMTNLTKE EFVHVLRRQS 240 TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEIEAARAYD KAAIKCNGKE 300 AVTNFEPSIY ENELNSIESS DHNLDLSLGG SSSNQGIREL GDNRGGQNHS SMQFDIDWRR 360 NGLRPEKQSA LIDARRRDSG YNEAETLQLL SQTHLHSPVS LKHNNNN

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MWDLNDSPDR RRPDFDESEE AYSSQVHRVG SFSNSSSSAV ATDDVSEEEV GVRSGKKKRS  60
TKPSKIFGFS VLGPDDEEEE KPVTRQFFPV DEPETGCVTN DSPNFPRAHW VGVKFYQNEP  120
LVNTGLAKPI DMAKQQQQQQ PPPIKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFSLEDYESD LKQMTNLTKE EFVHVLRRQS  240
TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEIEAARAYD KAAIKCNGKE  300
AVTNFEPSIY ENELNSIESS DHNLDLSLGG SSSNQGIREL GDNRGGQNHS SMQFDIDWRR  360
NGLRPEKQSA LIDARRRDSG YNEAETLQLL SQTHLHSPVS LKHNNNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-114	AP2 family protein