PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU27167.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 332aa    MW: 37570.9 Da    PI: 6.6693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU27167.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.51.4e-15257281226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ktelC+ +++tGtC+yG++C+FaHg
  PHU27167.1 257 KTELCNKWQETGTCPYGENCQFAHG 281
                 9***********************8 PP

2zf-CCCH19.41.8e-06294319126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykte Cr  +++  C+yG rC+F H+
  PHU27167.1 294 YKTEVCRMVLAGDMCPYGHRCHFRHS 319
                 9**********55**********998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MENENPNPDG VNTSTVDAAT VFSDTASPHL ADNPFLSPTS THQFDSSEFI PNFYSTFSRS  60
SNSPSLTSFD DMDDLVSDRR FHQASYILEY QQLYNRYTLC LAHLQESIKE VEALHQENES  120
LRLVNTDLDR RLSLLTQATI QNCLLSDFNR FGMGVNRDAQ ISDSRPPNIR QGIVEPKRPE  180
RRNTERVSLP KSISVRSSGY LKLKAQDGNN GGPSQAKAKQ KSAAPPLTES QQRVYVPGGK  240
KTEEAIEFDV YNQGMLKTEL CNKWQETGTC PYGENCQFAH GITELRPVIR HPRYKTEVCR  300
MVLAGDMCPY GHRCHFRHSL TEEERRTGPG LF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-73C3H family protein