PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU27107.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 1006aa MW: 108230 Da PI: 6.7884

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU27107.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.2e-06	983	1006	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ f+++G Ck G+ C + H+ PHU27107.1 983 GQRICK-FYESGRCKKGAACDYLHP 1006 6899.8899***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1006 aa Download sequence
MAAAAAGTSS SAMLDGSVGT SVGLTKSEQS SFVHCTEGSQ LVGVQSTVAG VSPTDAAVVD 60 GRNSAVNLIG HGGVDRRKRG RPPRSQAVKP PPPKKQREED EDVCFICFDG GSLVLCDRRG 120 CPKAYHPACI KRDEAFFRSK AKWNCGWHIC SVCQKTSHYL CYTCTYSLCK ACTKNADYLC 180 VRGNKGFCST CMKTIMLIEN KDQANKEMVQ VDFDDKTSWE YLFKVYWVIL KEKLSLTLDE 240 LVQAKNPWKE SDAVYGKRPL LPYGHYVAND GKGISGKSSE KREACGTNIF DKKGNQFTVE 300 QAVDRSGSEA SIASLSTANS SSVNSCETDK LWHYRDPAKR IQGPFSVMQL RKWNTSGLFP 360 PDMRIWTNHE HEDSVLLTNA LKGLFHKEFQ VHDKTSSQSW EPAGLDSRTS VRWTESATGS 420 GGECGKKEAP RHLHNANYYS NSNTQFTRTS GWLPPSFQQC VESLKANNSC FDKPQLSSSP 480 SSSQREVILA LPRQEKGQEN DNCHSVAAHG TQNSHKSTSC YAQSNSQNLG PSSGQNQGSF 540 TSNKCSINLD CGSTFASATQ SRDSFEQKGK MNFPDLPSPT PETRYGDIEA QAAEKLLLLS 600 SVIPFCGSDI HDLPSPTPIS NGEAQGGHAD ENKESGPSSL PDCEPQVVGG PHLREIADEW 660 GRSSPAAKPS TEEWDSGVVS VSSQKPADTV GDHVATPPSH GDQLTAKPST DHPGLVSVSS 720 LKPADTPIEF STLAEESVSD LLAEVDALES QNQNGMGSPT SAMRCSEGMI PGCKTGYFSP 780 MEELSPTHDP VRSDALSSTG DLQLPCQSTV TDETVGASRA DAFDPLRRSA GNSSTSSEGE 840 TKSADVLFSQ GDVGSVIPAP CTTSQTTAFS AMGRSTGFEG MTNGRGAAPG NQNWGGPVQG 900 YANFGYGSST GAAWGNSHMN RGAPFSGNPM WDSQRRYAGE RSGGPRDWAL QGGESGFGRG 960 RSSWNNRQQP YGGGGYSRPP PKGQRICKFY ESGRCKKGAA CDYLHP

Sequence ? help Back to Top

Protein Sequence Length: 1006 aa Download sequence

MAAAAAGTSS SAMLDGSVGT SVGLTKSEQS SFVHCTEGSQ LVGVQSTVAG VSPTDAAVVD  60
GRNSAVNLIG HGGVDRRKRG RPPRSQAVKP PPPKKQREED EDVCFICFDG GSLVLCDRRG  120
CPKAYHPACI KRDEAFFRSK AKWNCGWHIC SVCQKTSHYL CYTCTYSLCK ACTKNADYLC  180
VRGNKGFCST CMKTIMLIEN KDQANKEMVQ VDFDDKTSWE YLFKVYWVIL KEKLSLTLDE  240
LVQAKNPWKE SDAVYGKRPL LPYGHYVAND GKGISGKSSE KREACGTNIF DKKGNQFTVE  300
QAVDRSGSEA SIASLSTANS SSVNSCETDK LWHYRDPAKR IQGPFSVMQL RKWNTSGLFP  360
PDMRIWTNHE HEDSVLLTNA LKGLFHKEFQ VHDKTSSQSW EPAGLDSRTS VRWTESATGS  420
GGECGKKEAP RHLHNANYYS NSNTQFTRTS GWLPPSFQQC VESLKANNSC FDKPQLSSSP  480
SSSQREVILA LPRQEKGQEN DNCHSVAAHG TQNSHKSTSC YAQSNSQNLG PSSGQNQGSF  540
TSNKCSINLD CGSTFASATQ SRDSFEQKGK MNFPDLPSPT PETRYGDIEA QAAEKLLLLS  600
SVIPFCGSDI HDLPSPTPIS NGEAQGGHAD ENKESGPSSL PDCEPQVVGG PHLREIADEW  660
GRSSPAAKPS TEEWDSGVVS VSSQKPADTV GDHVATPPSH GDQLTAKPST DHPGLVSVSS  720
LKPADTPIEF STLAEESVSD LLAEVDALES QNQNGMGSPT SAMRCSEGMI PGCKTGYFSP  780
MEELSPTHDP VRSDALSSTG DLQLPCQSTV TDETVGASRA DAFDPLRRSA GNSSTSSEGE  840
TKSADVLFSQ GDVGSVIPAP CTTSQTTAFS AMGRSTGFEG MTNGRGAAPG NQNWGGPVQG  900
YANFGYGSST GAAWGNSHMN RGAPFSGNPM WDSQRRYAGE RSGGPRDWAL QGGESGFGRG  960
RSSWNNRQQP YGGGGYSRPP PKGQRICKFY ESGRCKKGAA CDYLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	4e-82	C3H family protein