PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU26834.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 297aa    MW: 32988 Da    PI: 4.6485
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU26834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61.1e-157451250
                HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 f k +++i KK  ELSvLCd++v+ i+++++g++ +++
  PHU26834.1  7 NFKKKKETIVKKTRELSVLCDVKVCAILVAPNGEVDTWP 45
                599***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MKKKASNFKK KKETIVKKTR ELSVLCDVKV CAILVAPNGE VDTWPENPTE LNPIIQSYKE  60
NVVAGKRKVI DGGLFKNKSK SNNVALLCDN GDDDEWIKNL SKQSLLVKLN TKLAAVEKRI  120
EFLKMGSVIS SSSRGKQVVA NGDQLSSEKQ VVGANQENYN VGCDEYWGSS FAINDDQLGK  180
TSTAYNQERD IVMTSEFNCS AYNQDQEVGR SMGHEGQLME EVGGSMGHEG QLMVPSNEMN  240
MWENFEWDDV WSIINGPDLE FDLLTKGATG FGTSLNQQTI VNDGSNPNYD YFIPLSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37415.12e-08M-type_MADS family protein