PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU26699.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 667aa MW: 75089.6 Da PI: 4.6009

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU26699.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.6	2.4e-12	502	545	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r rW++++ el+++av+q+G++ ++I + ++ gRt+ q+k+++ k PHU26699.1 502 RTRWSKQDTELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 545 78******************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MWFISSTLYF IHFYTEIAKT SCVDSKFMDL LDDIFAGGAS KTVKAGGKFR PLKKGPAVAS 60 SAVSLTSKPT GDTVATDSFE ALKTAKNSQN CYEQNYVSAE PSLEHPLKAE TLGPSVGSSL 120 DASMVMTDTN EDWKSCFEKS EGEEMDPYPS LESDILGVTT ISGQSRRFQP KPKLQVYRER 180 YDTIIPDSDV GESVSSQPDS HYVHSEMGFV DNGKEHELPA AVVLDSLARG FDNNIITESA 240 HEFSVHEEYV VEASLPDSGI PAKHSEATVQ MPEEPVSQRP KTKKQKVRAS NLSAISEENR 300 ESRSLRSRRK SVNANRLVDE SEEVIDDGEY VPEHPNDSDT NGNDDDVLVE NDSQGETTLK 360 RSKKTVTKEG KRVRKSKKTA EASDQVANKK PKKFSHSTRQ KRRTVDKALL EAPEDEIDYS 420 KVPIKDLILL AEHKERLAKK DPAASQIPTT DQSVGASFSN YDDDETYAVD EDGEANDHNK 480 SPRGEDTSAY FNYQTYMDKT PRTRWSKQDT ELFYEAVQQF GTDLSLIQQL FPGRTRRQLK 540 LKYKKEERKN PFMLHDALTN RSKDHSHFER VIEQLKQIEA EELQYADKDE SIGLTGEEEM 600 EGTQEVNEGE AMSEKQHTQE EEAMPEHVDE KEVEAVGQDV PGIESPVKED YDSEDDFLKW 660 SQYTSEV

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MWFISSTLYF IHFYTEIAKT SCVDSKFMDL LDDIFAGGAS KTVKAGGKFR PLKKGPAVAS  60
SAVSLTSKPT GDTVATDSFE ALKTAKNSQN CYEQNYVSAE PSLEHPLKAE TLGPSVGSSL  120
DASMVMTDTN EDWKSCFEKS EGEEMDPYPS LESDILGVTT ISGQSRRFQP KPKLQVYRER  180
YDTIIPDSDV GESVSSQPDS HYVHSEMGFV DNGKEHELPA AVVLDSLARG FDNNIITESA  240
HEFSVHEEYV VEASLPDSGI PAKHSEATVQ MPEEPVSQRP KTKKQKVRAS NLSAISEENR  300
ESRSLRSRRK SVNANRLVDE SEEVIDDGEY VPEHPNDSDT NGNDDDVLVE NDSQGETTLK  360
RSKKTVTKEG KRVRKSKKTA EASDQVANKK PKKFSHSTRQ KRRTVDKALL EAPEDEIDYS  420
KVPIKDLILL AEHKERLAKK DPAASQIPTT DQSVGASFSN YDDDETYAVD EDGEANDHNK  480
SPRGEDTSAY FNYQTYMDKT PRTRWSKQDT ELFYEAVQQF GTDLSLIQQL FPGRTRRQLK  540
LKYKKEERKN PFMLHDALTN RSKDHSHFER VIEQLKQIEA EELQYADKDE SIGLTGEEEM  600
EGTQEVNEGE AMSEKQHTQE EEAMPEHVDE KEVEAVGQDV PGIESPVKED YDSEDDFLKW  660
SQYTSEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	359	378	LKRSKKTVTKEGKRVRKSKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	6e-51	MYB_related family protein