PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU26644.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 341aa MW: 38289.6 Da PI: 7.0109

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU26644.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.6e-12	204	229	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ PHU26644.1 204 YQPDICKDYKETGYCGYGDSCKFMHD 229 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MENSDTPACD SNAPKAEAEQ LPAAPTSSSP VCNFFKKPSK GKNIRKRPAV DEGENDDAEG 60 DSSVIYTKKK SAVNNKLHFS TGPSKSNKDT ESSVDSKASR FHFESSKEIQ VQNDSRATAT 120 LETETEFSKD ARAIRERALK QAEEALKGKS KTGGDEKLYK GINQYTDYKA GLRREHTISS 180 EKAGGAHGPL RASAHIRVSA RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKSGWQME 240 KEWEEAEKER KRKLALGMLD EDDEDAEKSD EDDDDVLPFA CFICREPFVD PVVTKCKHYF 300 CEHCALKHHA KNKKCYVCNQ PTLGIFNTAF EIRKKMVAQG K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-148	C3H family protein