PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU26603.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 735aa    MW: 81022.7 Da    PI: 5.9347
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU26603.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.8e-1963118156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL ++l+L   qVk+WFqN+R+++k
  PHU26603.1  63 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRRLELAPLQVKFWFQNKRTQMK 118
                 688999***********************************************998 PP
2START1978.8e-622514721206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                 ela +a++el ++a+ +ep+W + s      + ++e+ ++f+++ +       ++ea+ras vv+m++ +lve+l+d + qW+  +a    + + +ev+
  PHU26603.1 251 ELAVSAMEELTRMAQTDEPMWITNSensiVTLCEEEYARTFPRGITgpkpltLNSEASRASSVVIMNPINLVEILMDAN-QWTSVFAglvsRGMAVEVL 348
                 57899******************9988888899**********999*********************************.******************* PP

                 CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                 s+g      galq+m+ae+q++splvp R+  f+Ry++q+ +g+w++vdvS+ds ++ p  +++ R   +pSg+li++++ng+s+vtwvehv+ +++ +
  PHU26603.1 349 STGvagnynGALQVMTAEFQVPSPLVPiRENFFLRYCKQHDDGTWAVVDVSLDSLRPSP-VPPCRR---RPSGCLIKELPNGYSQVTWVEHVEADEKAV 443
                 *********************************************************99.466655...****************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h ++++lv+sgla+gak+wvatl+rqce+
  PHU26603.1 444 HDMYKPLVSSGLAFGAKRWVATLERQCER 472
                 ***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    
MYKPNMFDSH QHLLDTPSST QKSQETEMDF LREEELESKS GTDIMEGQHS GDDQDPNQRP  60
TKKKRYHRHT QHQIQEMEAF FKECPHPDDK QRKELGRRLE LAPLQVKFWF QNKRTQMKAQ  120
HERCENTHLR NENDKLRAEN IRYKEALTNA SCPHCGGPTA IGEMSFDEQQ LRVENTRLRE  180
EIDRISGIAA KYVGKPMLNF PPHLPPPEAP RSLDLAFGPQ SGLLDEMYNV GDIFRTAIRG  240
LTDGEKPMVI ELAVSAMEEL TRMAQTDEPM WITNSENSIV TLCEEEYART FPRGITGPKP  300
LTLNSEASRA SSVVIMNPIN LVEILMDANQ WTSVFAGLVS RGMAVEVLST GVAGNYNGAL  360
QVMTAEFQVP SPLVPIRENF FLRYCKQHDD GTWAVVDVSL DSLRPSPVPP CRRRPSGCLI  420
KELPNGYSQV TWVEHVEADE KAVHDMYKPL VSSGLAFGAK RWVATLERQC ERLASAMANN  480
IQTGDVGIFT SPAGRKSMLK LAERMVRSFC AGVGTSTTHT WTTLSGSGAD DVRVMTRKSI  540
DDPGRPPGIV LSAATSFWLP VSPKRVFDFL RDENSRSEWD ILSNGGVIQE MAHIANGRDP  600
GNCVSLLRVN SGNSHQSNML ILQESSTDPI GSYVIYAPVD IVAMNVVLSG GDPDYVALLP  660
SGFAILPDGS TNHHGGSGSS SDVGSVGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIK  720
CTVDRIKSAV TPESA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein