PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU26182.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 178aa MW: 20608.1 Da PI: 8.3421

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU26182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.9e-19	16	70	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q++ Le F +n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k PHU26182.1 16 CHKKRLTQDQVRLLEISFSSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWK 70 567789************************************************9 PP
2	HD-ZIP_I/II	113.8	1.1e-36	17	108	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl+++qv+lLE sF++++kL+++rK++la+eLgl prqva+W+qn+RAR+kt+ lE+dy++L++++d+ e+ne+L+ eve+Lr+el++ PHU26182.1 17 HKKRLTQDQVRLLEISFSSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWKTQSLEVDYKTLQQRLDTALEDNEKLKLEVERLRKELNK 108 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MDFLNVQSTR KSHLKCHKKR LTQDQVRLLE ISFSSNNKLD SDRKSQLAQE LGLPPRQVAI 60 WYQNKRARWK TQSLEVDYKT LQQRLDTALE DNEKLKLEVE RLRKELNKTQ EMLLGFNTTT 120 NYSSISSSCD EVGSTSCLQL HDQSKHNHLD KEFFACLIGD EGHFGTPNGH NFFTSSMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	20	RKSHLKCHKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-26	HD-ZIP family protein