PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25839.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 830aa MW: 91668.9 Da PI: 6.1788

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.8	3.2e-17	5	63	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ +r +L +++ +++ +q+kvWFqNrR +ek+ PHU25839.1 5 KYVRYTPEQVEALERVYAECPKPTSIKRHQLIRECsilsNVDPKQIKVWFQNRRCREKQ 63 6789*****************************************************97 PP
2	bZIP_1	21.6	4.8e-07	57	98	18	59
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 rr+R++ ++e +L++ +L+a Nk L +e+++l+k+v+ l PHU25839.1 57 RRCREKQRKEASHLQTVNRKLTAMNKLLMEENDRLQKQVSHL 98 9*************************************9977 PP
3	START	168.8	3.7e-53	153	357	2	204
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aee+++e+++ka+ ++ Wv++ +++g+e++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++ ++l vi +g g+++l++ ++ PHU25839.1 153 IAEETLAEFLSKATGTAVDWVQMIGMKPGPESIGIVAVSRNCDGVAARACGLVSLEPM-KVAEILKDRPSWYHDCRCLDILSVIPTGkgGTIELIYLQT 250 68999***************************************************.8888888888************************** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktw 196 +a+++l++ Rdf+++Ry+ +l++g++vi+++S+++++ p s+vRa++lpSg+li+p ++g+s +++v+h+dl++ +++++lr+l++s+ + ++k++ PHU25839.1 251 YAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTPTTGGPPATSSVRATMLPSGYLIRPFEGGGSIIHIVDHIDLDACSVPEVLRPLYESSKILAQKMT 349 ***********************************99****************************************************** PP HHHTXXXX CS START 197 vatlqrqc 204 +a++++ + PHU25839.1 350 MAAFRYVR 357 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence
MDTSKYVRYT PEQVEALERV YAECPKPTSI KRHQLIRECS ILSNVDPKQI KVWFQNRRCR 60 EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY DNGYMRQQLH TVNSTTTDTC 120 CETVVVSGQQ QQQNPMAQHP QRDVNSPTGL LAIAEETLAE FLSKATGTAV DWVQMIGMKP 180 GPESIGIVAV SRNCDGVAAR ACGLVSLEPM KVAEILKDRP SWYHDCRCLD ILSVIPTGKG 240 GTIELIYLQT YAPTTLASAR DFWTLRYTTS LEDGSLVICE RSLTPTTGGP PATSSVRATM 300 LPSGYLIRPF EGGGSIIHIV DHIDLDACSV PEVLRPLYES SKILAQKMTM AAFRYVRQIA 360 QETNGEIQYV GGRQPAALRA FSQRLCRGFN NAVSGFIDDG WTIMDSDGLE DVTIAVNSSP 420 NKFLDAQYNT LSILPTFGGV LCARASMLLQ DVCPALLVRF LREHRSEWAD YGVDAYSSAS 480 LKASPYAVPC ARPGVFPSSQ VILPLAQTVE HEEFLEVVRL EGHAFSPENI ALSRDMYLLQ 540 LCSGIEENAT GACAQLVFAH IDESFGDDAP LLPSGFSVIP LEPKSDSPIA ARTLDLASTL 600 EARTGGTRPA GEVEGSKYNH RSVLTIAFQF TFENHYRENV AAMARQYVRN IVGSVQRVAM 660 AIAPSRLCSQ MTPKCFPGSP EAITLARWIC KSYKVHTGGE LLQVDSQAAG DAVLKQLWHH 720 TDSIMCCSVK MNDSAVFSFA NQAGLDMLET TLIALQDIML DKILDEAGRK ILLSEFPKIM 780 QQGFAYLPAG LCVSSMGRPV SYEQAVAWKV LNDDNANYCL AFMFVNWSFV

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence

MDTSKYVRYT PEQVEALERV YAECPKPTSI KRHQLIRECS ILSNVDPKQI KVWFQNRRCR  60
EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKQVSHLVY DNGYMRQQLH TVNSTTTDTC  120
CETVVVSGQQ QQQNPMAQHP QRDVNSPTGL LAIAEETLAE FLSKATGTAV DWVQMIGMKP  180
GPESIGIVAV SRNCDGVAAR ACGLVSLEPM KVAEILKDRP SWYHDCRCLD ILSVIPTGKG  240
GTIELIYLQT YAPTTLASAR DFWTLRYTTS LEDGSLVICE RSLTPTTGGP PATSSVRATM  300
LPSGYLIRPF EGGGSIIHIV DHIDLDACSV PEVLRPLYES SKILAQKMTM AAFRYVRQIA  360
QETNGEIQYV GGRQPAALRA FSQRLCRGFN NAVSGFIDDG WTIMDSDGLE DVTIAVNSSP  420
NKFLDAQYNT LSILPTFGGV LCARASMLLQ DVCPALLVRF LREHRSEWAD YGVDAYSSAS  480
LKASPYAVPC ARPGVFPSSQ VILPLAQTVE HEEFLEVVRL EGHAFSPENI ALSRDMYLLQ  540
LCSGIEENAT GACAQLVFAH IDESFGDDAP LLPSGFSVIP LEPKSDSPIA ARTLDLASTL  600
EARTGGTRPA GEVEGSKYNH RSVLTIAFQF TFENHYRENV AAMARQYVRN IVGSVQRVAM  660
AIAPSRLCSQ MTPKCFPGSP EAITLARWIC KSYKVHTGGE LLQVDSQAAG DAVLKQLWHH  720
TDSIMCCSVK MNDSAVFSFA NQAGLDMLET TLIALQDIML DKILDEAGRK ILLSEFPKIM  780
QQGFAYLPAG LCVSSMGRPV SYEQAVAWKV LNDDNANYCL AFMFVNWSFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein