PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25508.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 281aa MW: 31973.5 Da PI: 5.922

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.2e-18	78	131	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k PHU25508.1 78 KKRRLNMEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 131 456899**********************************************99 PP
2	HD-ZIP_I/II	129.1	1.7e-41	77	168	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++el+ PHU25508.1 77 EKKRRLNMEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKSDNDALKTQNKQLHSELQ 168 69***************************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MLFSNTGTMA FVPGAPEEND LPPSFPSVFP PPCAPHQEFQ GISSVLMRRA MSFDHQDSRA 60 DDIDMSDDDG SSQLLGEKKR RLNMEQVKAL ERSFEIGNKL EPERKMQLAR ALGLKPRQIA 120 IWFQNRRARC KTKQLEKDYE ILKRQCDKLK SDNDALKTQN KQLHSELQLL TLSNRESAGG 180 GTTILFNLNK ENEGSNWNNG SGDENSTIID VNLGTTTRTS STNSPRNNNN NNNHDHVFPT 240 SANYKIEEQT HVPEEGYCNL FNNVVEDQTN YWPLPVQQHF Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	134	RRARCKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	4e-49	HD-ZIP family protein