PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25260.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 799aa MW: 89869 Da PI: 6.4742

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25260.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.5	1.6e-10	147	191	53	99
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ PHU25260.1 147 SRQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQLLLGIRRA 191 678899*************************..78888899999986 PP
2	Auxin_resp	116	3.3e-38	216	299	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k PHU25260.1 216 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 299 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence
MRKFLRSSSV YKFPEFIALS VINGERHVAN GEWRGKAVSP SALVGDATCE RICQGENGDE 60 ALKDMPWREN GDEALKTTPF YFLFLKIRVL RIKEIRNEVK AFVDSKAVAN PKNQRCVPSY 120 NIIDDDDDDV DEHQEMMPPS KSQRMSSRQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND 180 KNQLLLGIRR AIRPQTVMPS SVLSSDSMHI GLLAAAAHAA ATNSCFTVFF NPRASPSEFV 240 IPLSKYIKAV YHTRVSVGMR FRMLFETEES SVRRYMGTIT GIGDLDPVRW ANSHWRSVKV 300 GWDESTAGER QPRVSLWEIE PLTTFPMYPS LFPLRLKRPL YPGTSSYQDS NNEAINRMPW 360 LRGNTSELGP HSMNLQSFGM LPWMQQRVDS RIIPNDINQH YQAMLATGLQ SFGSGDLLKQ 420 QLVQFQQPAQ YLQHASTDNS ILHQQQIMLQ AVHQHMQPAQ TQMLSENLQR QSQQQSNNQS 480 EEQAHQHAYQ EAFQIPHNQL QQRPSSNVSS QFLKADFADL NSKFSASVAP SGVQNMLGSL 540 CSEGSSNSLN INRTGQCVIM EQPPQQSWMS KFAESQLNTC SNSSPLPTYE KDTSNPRENC 600 SLDSQNQVLF GANVDSSGHL LPTRVSNVTT TCADMSAMPL GASGYQNSLY GYAQDSSELL 660 HNAGQIDPPN ATHTFVKVYK SGCVGRSLDI TQFHSYHELR RELGQMFGIE GFLEDPQRSG 720 WQLVFVDREN DILLLGDDPW EAFVNNVWYI KILSPEDVQK LGKEEAESLN RGAVERMSSS 780 SVDDRDLISG MPSLGSLEY

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence

MRKFLRSSSV YKFPEFIALS VINGERHVAN GEWRGKAVSP SALVGDATCE RICQGENGDE  60
ALKDMPWREN GDEALKTTPF YFLFLKIRVL RIKEIRNEVK AFVDSKAVAN PKNQRCVPSY  120
NIIDDDDDDV DEHQEMMPPS KSQRMSSRQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND  180
KNQLLLGIRR AIRPQTVMPS SVLSSDSMHI GLLAAAAHAA ATNSCFTVFF NPRASPSEFV  240
IPLSKYIKAV YHTRVSVGMR FRMLFETEES SVRRYMGTIT GIGDLDPVRW ANSHWRSVKV  300
GWDESTAGER QPRVSLWEIE PLTTFPMYPS LFPLRLKRPL YPGTSSYQDS NNEAINRMPW  360
LRGNTSELGP HSMNLQSFGM LPWMQQRVDS RIIPNDINQH YQAMLATGLQ SFGSGDLLKQ  420
QLVQFQQPAQ YLQHASTDNS ILHQQQIMLQ AVHQHMQPAQ TQMLSENLQR QSQQQSNNQS  480
EEQAHQHAYQ EAFQIPHNQL QQRPSSNVSS QFLKADFADL NSKFSASVAP SGVQNMLGSL  540
CSEGSSNSLN INRTGQCVIM EQPPQQSWMS KFAESQLNTC SNSSPLPTYE KDTSNPRENC  600
SLDSQNQVLF GANVDSSGHL LPTRVSNVTT TCADMSAMPL GASGYQNSLY GYAQDSSELL  660
HNAGQIDPPN ATHTFVKVYK SGCVGRSLDI TQFHSYHELR RELGQMFGIE GFLEDPQRSG  720
WQLVFVDREN DILLLGDDPW EAFVNNVWYI KILSPEDVQK LGKEEAESLN RGAVERMSSS  780
SVDDRDLISG MPSLGSLEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein