PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU25224.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 504aa MW: 56226.3 Da PI: 9.3172

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU25224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	27.8	6.4e-09	159	208	8	55
AP2 8 wdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g PHU25224.1 159 RHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 208 89**********6666777775555599****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MASPSSEPTA KTEGSSGNDA GGGETSEAMG NIGTDQLLLY RGLKKAKKER CYTAKERISK 60 MPPCTAGKRS SIYRGVTRYV VEKRQIADGS EVLVSLCKDV LFSSILRVAI NPTPSQEPNT 120 NILSQSSAML RALTPTRATY FQLELLTCRR VRVSSATSRH RWTGRYEAHL WDKSTWNQNQ 180 NKKGKQGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY SRDLEEMQNV SREDYLASLR 240 RKSGGFSRGI SKYRPLSSRW DLQFGRVPGA DYFNSLHYGD NATVDNEYID GFCMDRKIDL 300 SSYIKWWVGN KARQTDSHVK LSEEAKVGCP EDIDNELRAS ELSIQQTEPY EMPRLGVFQG 360 KKNHKSSTLS AMSILSQSAA YKSFQEKVAK KKEKVENDEN ENKSTINRVD RGKMIEKSSP 420 DSGSEKLGAA FLNAGGLSIN RNLHPLTPLL SAPLLTNYNS IDPLTDPVLW TSLVPNFHTG 480 SSRPTEVSFS HQSLVYLVLH ILSV

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MASPSSEPTA KTEGSSGNDA GGGETSEAMG NIGTDQLLLY RGLKKAKKER CYTAKERISK  60
MPPCTAGKRS SIYRGVTRYV VEKRQIADGS EVLVSLCKDV LFSSILRVAI NPTPSQEPNT  120
NILSQSSAML RALTPTRATY FQLELLTCRR VRVSSATSRH RWTGRYEAHL WDKSTWNQNQ  180
NKKGKQGAYD DEEAAARAYD LAALKYWGPG TLINFPVTDY SRDLEEMQNV SREDYLASLR  240
RKSGGFSRGI SKYRPLSSRW DLQFGRVPGA DYFNSLHYGD NATVDNEYID GFCMDRKIDL  300
SSYIKWWVGN KARQTDSHVK LSEEAKVGCP EDIDNELRAS ELSIQQTEPY EMPRLGVFQG  360
KKNHKSSTLS AMSILSQSAA YKSFQEKVAK KKEKVENDEN ENKSTINRVD RGKMIEKSSP  420
DSGSEKLGAA FLNAGGLSIN RNLHPLTPLL SAPLLTNYNS IDPLTDPVLW TSLVPNFHTG  480
SSRPTEVSFS HQSLVYLVLH ILSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41710.3	1e-116	AP2 family protein