PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU25176.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family AP2
Protein Properties Length: 501aa    MW: 56995.8 Da    PI: 7.8502
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU25176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17157206155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PHU25176.1 157 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 206
                 78*******************......55************************997 PP
2AP243.29.9e-14249299155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+       g    +k+++lg f+t++eAa+a+++a+ k +g
  PHU25176.1 249 SKYRGVTLHK-CGRWEAR---M---GqllGKKHVYLGLFDTENEAARAYDKAAIKCNG 299
                 89********.7******...5...334336**********************99776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    
MWNLNNSPDH RRDDGSEEGK GVGSVSNSSS SAVEELYGSE EEDNDQAEEN GEIKSKKKRS  60
TPSKIFGFSM TAPTNNDNLS SENVAPVTRQ FFPVDESENN GTENFEGDDR SCIFPRAHWA  120
GVKFYQPEPS GVYQLSQQQL PVQPMKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  180
QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFNLEDYEE DFKQMKNLTK EEFVHVLRRQ  240
STGFPRGSSK YRGVTLHKCG RWEARMGQLL GKKHVYLGLF DTENEAARAY DKAAIKCNGK  300
DAVTNFDPSI YENELYSTES TNKAADHSLD LSLGSSSSKQ SRRETEHTYK DQNSSSMQFN  360
VDWPHQGSRP RPKQPSPIDM DGRRRNVYNE TETLQLLSQT HLHSPGSFKP NSNEMQRFGQ  420
YMRAGDSQMF PPQFTSSNYQ VQFPSSSNRR DQWQINNVLP PHPTSTICNC CSIIRIPSAD  480
IKTSKLVSEE WLPYSLTRPS N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.11e-107AP2 family protein