PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU25010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LSD | ||||||||
Protein Properties | Length: 175aa MW: 18131.2 Da PI: 8.2503 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.7 | 8e-13 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCrt+L YPrGA++V+Ca+C+ PHU25010.1 7 CSGCRTILLYPRGATNVCCAVCNV 30 **********************95 PP | |||||||
2 | zf-LSD1 | 47.4 | 3.1e-15 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ PrGA+sVRCa+C+tV PHU25010.1 46 CGGCRTLLMHPRGATSVRCACCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 39.8 | 7.4e-13 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP GApsV+Ca+C+ PHU25010.1 84 CGNCRTMLMYPCGAPSVKCAICHC 107 **********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MQSQLVCSGC RTILLYPRGA TNVCCAVCNV LTPVPPPGME MAQLICGGCR TLLMHPRGAT 60 SVRCACCHTV NLVPGPNQFA HVNCGNCRTM LMYPCGAPSV KCAICHCITH ISAVDGRVPV 120 PMHTSNGGVT SSAGPSSSTA TARSQNQTVV VQNPMSLDES GKLVSNVVVG VTTTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 1e-53 | LSD family protein |