PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24865.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 1108aa MW: 124552 Da PI: 6.5093

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.1	1.4e-22	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ + W++++iyr++++r++lt+GW+ F ++++L++gD+v+F + +++ +l PHU24865.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QELMARDLHDQAWTFRHIYRGQPKRHLLTTGWSVFISSKRLCAGDSVLFIR--DEKSQL 220 99***************************954.5444.38**********************************************4..466667 PP EEEEE-S CS B3 93 vvkvfrk 99 ++++ r+ PHU24865.1 221 LLGIKRA 227 8888765 PP
2	Auxin_resp	124.5	7.3e-41	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++k+++++vs+GmRf+m+fete+s rr++Gt++gvsdldp+rW+nS+Wr+L+ PHU24865.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYSKSMYSQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPIRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence
MKAPSNGYIP NSGEGERKLM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDGIPSYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYDQEALL LSDMGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELMARD LHDQAWTFRH 180 IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYSKSMYSQV SLGMRFRMMF 300 ETEESGVRRY MGTITGVSDL DPIRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP 360 FYICPPPFFR PKFHKQPSFP GDESDIENVL KRGMPWISDE FGLKDAQSSI FPGLSLVQWM 420 SMQQNNHLPV AQSGLASVLH SNIGTDDHSK LLNFQSPTLA SPDLQFNKPN QLNQQFGQIQ 480 QPPLAWAQQQ QPPLQSPIIA QQRQHTLQQQ QQHQQQQHLQ QQQQQQQQHS QQQQQQQQQQ 540 PQQHMLHQQP QPQPQPQLHQ QAQQLQQKQR PSQQQHLTVN SSPVNHCVSP NQIPNQTFPQ 600 AVIYGQLQQQ QVLSSSIQSQ QNVPVNRNPF PSPSLAQDLQ FQQQVEQQSN LLQKSQQQHT 660 IPQEAPLQLL QQSLMQRPQV QPSSQQSLTE QQLQLQLLNK LQQQQKQQAQ LLSPVSCTLE 720 PRMSQQQQNR QPQELQFAHQ QLSSSIMMAA THLQSPQHAF NQLQNQNKLP ITIKGISGAT 780 DGDAPSCSTS PSTNNFQVSP PNFLTRNQEQ ALQLDESVVD PSQEQNKSEF RIKHEPPFSK 840 GSEQSKYKAS GTENLEAASS TTSYGLDYSG FNFSLPALCV DGDVQSHSRS SLPSAVNNID 900 GLNPDALLSR DYDSGKDMQN LFSPFGNAPK DIETELSDAG INSQQFGVPN MSYKPRCSDL 960 AVIDNGVLNN NSWMNQTQRM RTYTKVQKRG SVGRTIDVTR YVGYDELRHD LARMFGIEGQ 1020 LEDPQRTEWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSCAEVQQMS LDGDLGDVPI 1080 PNQASSGTDS GNAWRGHYDD NSAASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence

MKAPSNGYIP NSGEGERKLM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDGIPSYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP VNKYDQEALL LSDMGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELMARD LHDQAWTFRH  180
IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYSKSMYSQV SLGMRFRMMF  300
ETEESGVRRY MGTITGVSDL DPIRWKNSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP  360
FYICPPPFFR PKFHKQPSFP GDESDIENVL KRGMPWISDE FGLKDAQSSI FPGLSLVQWM  420
SMQQNNHLPV AQSGLASVLH SNIGTDDHSK LLNFQSPTLA SPDLQFNKPN QLNQQFGQIQ  480
QPPLAWAQQQ QPPLQSPIIA QQRQHTLQQQ QQHQQQQHLQ QQQQQQQQHS QQQQQQQQQQ  540
PQQHMLHQQP QPQPQPQLHQ QAQQLQQKQR PSQQQHLTVN SSPVNHCVSP NQIPNQTFPQ  600
AVIYGQLQQQ QVLSSSIQSQ QNVPVNRNPF PSPSLAQDLQ FQQQVEQQSN LLQKSQQQHT  660
IPQEAPLQLL QQSLMQRPQV QPSSQQSLTE QQLQLQLLNK LQQQQKQQAQ LLSPVSCTLE  720
PRMSQQQQNR QPQELQFAHQ QLSSSIMMAA THLQSPQHAF NQLQNQNKLP ITIKGISGAT  780
DGDAPSCSTS PSTNNFQVSP PNFLTRNQEQ ALQLDESVVD PSQEQNKSEF RIKHEPPFSK  840
GSEQSKYKAS GTENLEAASS TTSYGLDYSG FNFSLPALCV DGDVQSHSRS SLPSAVNNID  900
GLNPDALLSR DYDSGKDMQN LFSPFGNAPK DIETELSDAG INSQQFGVPN MSYKPRCSDL  960
AVIDNGVLNN NSWMNQTQRM RTYTKVQKRG SVGRTIDVTR YVGYDELRHD LARMFGIEGQ  1020
LEDPQRTEWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSCAEVQQMS LDGDLGDVPI  1080
PNQASSGTDS GNAWRGHYDD NSAASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein