PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU24837.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 200aa    MW: 22814.7 Da    PI: 7.9222
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU24837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.3e-133782148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T eE e  ++  ++lG++ W++Ia +++ gRt+ ++k++++++l
       PHU24837.1 37 RGPFTMEEVETVIKTYQELGSR-WSAIATKLP-GRTDTEVKNFFHTHL 82
                     89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MFSKSPELWS HVVAGLSRTG KSCRLRWMNY LHPDVKRGPF TMEEVETVIK TYQELGSRWS  60
AIATKLPGRT DTEVKNFFHT HLKKHLGLKN YDAQLKTRKG HKQTQENEKE NSTQGRLVLE  120
TINSSSSLSP DVCSPCSSSI TCKENQMMDQ FTNFSLVVDQ QVSHVENTNI QSCFIPGGST  180
FSTFDQFDMN SFWFDVLGNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.15e-35MYB family protein