PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24497.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 381aa MW: 42475.8 Da PI: 7.6197

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24497.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.9	4.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g+ R++k+c++rw +yl PHU24497.1 14 RGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	48.3	2.4e-15	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ PHU24497.1 67 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MGHHTCCSKQ KVKRGLWSPE EDEKLIKYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLQLSH 120 GTFSDLSIIF PNNNNLIANP NPNPSFDNSN SFNNPNVPIT NSFMSSTNNS SPLIQQLDQM 180 INFPNGDLNL INQVVPYSLP MSFDSMSNDP TWFNFNYPHH LQHDLEYNPS VIKQDNSNSM 240 FTSNISLNCT NGENFMDSTN ADIKIHQDLM MAPLLLPKLS ETIKGNEGGI LESTPVASQY 300 IHSMAISSLP CTIPTGYTMN PHNNNNVHRV VHEMKQIESV HMSSSPSSSK SSASGSSSLS 360 ALSCSQFMMN PSGNLPTTWD S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MGHHTCCSKQ KVKRGLWSPE EDEKLIKYIT TYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLQLSH  120
GTFSDLSIIF PNNNNLIANP NPNPSFDNSN SFNNPNVPIT NSFMSSTNNS SPLIQQLDQM  180
INFPNGDLNL INQVVPYSLP MSFDSMSNDP TWFNFNYPHH LQHDLEYNPS VIKQDNSNSM  240
FTSNISLNCT NGENFMDSTN ADIKIHQDLM MAPLLLPKLS ETIKGNEGGI LESTPVASQY  300
IHSMAISSLP CTIPTGYTMN PHNNNNVHRV VHEMKQIESV HMSSSPSSSK SSASGSSSLS  360
ALSCSQFMMN PSGNLPTTWD S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	6e-79	MYB family protein