PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24475.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 606aa MW: 67572.9 Da PI: 5.3143

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.3e-09	489	537	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT +E +lv++v+++G g+W+ I r Rt ++k++w+++l PHU24475.1 489 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascSYRTSVDLKDKWRNLL 537 8**************************999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MDAIEAKTEV SVVPVTNTFG ALEKEITDPI VYQLVRVDGD GRLVPATQDE IMVVEDLLED 60 DKCEPKLVPD TRQISESCIT EGYLMARNLF QVPEEKSNVL VDAVPDLGNI DAPEKVAVHG 120 LNPFSELSDF DQSVRTETCF LSQDASNEDM PSTSAAGSSW KPDFSKLEGK ICLDSLTVKE 180 LQETFKATFG RETSVKDKQW LKRRITMGLT NSCDFSCTTF IIRDNVVVKN GEEQIYHRVK 240 SRISADSEDG VANSDSIGSL GDRDNRINDD ADLCGEDVST SAFESCNVTK DLDTEQRTAK 300 RARKPTKRYI EELSELESRE SSEKLASPDK ISRYRFACPQ THMRPTKNVR SNARPLVTRE 360 DSLGGSGIQI PFVSRIRRSR PRENFMPLLK LQPCGMDMVT RKVTSAFDVS GPQEDDKRNN 420 DLIKSSSSPG WTQQPLIAAC EKDDHYSGMK IVELENDVEP NDCSEYNSDD NVVTVPTQKG 480 GMRRKHHRPW TIDEVVKLVE GVARYGAGRW SEIKRLAFAS CSYRTSVDLK DKWRNLLKAS 540 FVQLPAEKGI LNSRKQASVP IPAAILRRVR ELADMQGQFP PGLSTGKSSG HSSSDRSVHD 600 ARSGFL

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MDAIEAKTEV SVVPVTNTFG ALEKEITDPI VYQLVRVDGD GRLVPATQDE IMVVEDLLED  60
DKCEPKLVPD TRQISESCIT EGYLMARNLF QVPEEKSNVL VDAVPDLGNI DAPEKVAVHG  120
LNPFSELSDF DQSVRTETCF LSQDASNEDM PSTSAAGSSW KPDFSKLEGK ICLDSLTVKE  180
LQETFKATFG RETSVKDKQW LKRRITMGLT NSCDFSCTTF IIRDNVVVKN GEEQIYHRVK  240
SRISADSEDG VANSDSIGSL GDRDNRINDD ADLCGEDVST SAFESCNVTK DLDTEQRTAK  300
RARKPTKRYI EELSELESRE SSEKLASPDK ISRYRFACPQ THMRPTKNVR SNARPLVTRE  360
DSLGGSGIQI PFVSRIRRSR PRENFMPLLK LQPCGMDMVT RKVTSAFDVS GPQEDDKRNN  420
DLIKSSSSPG WTQQPLIAAC EKDDHYSGMK IVELENDVEP NDCSEYNSDD NVVTVPTQKG  480
GMRRKHHRPW TIDEVVKLVE GVARYGAGRW SEIKRLAFAS CSYRTSVDLK DKWRNLLKAS  540
FVQLPAEKGI LNSRKQASVP IPAAILRRVR ELADMQGQFP PGLSTGKSSG HSSSDRSVHD  600
ARSGFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	3e-95	MYB_related family protein