PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU24385.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 771aa    MW: 86328.8 Da    PI: 6.695
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU24385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.4e-21110165156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t +q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  PHU24385.1 110 RKKYHRHTVQQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 165
                 7999************************************************9877 PP
2START208.72.2e-652845093206
                 HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ++a+++l k+a+ +ep+W +s     e++n+de++++f+  +           +ea+r++g+v+m+l++l+++++d++ qW+e+++    ka+t++vi
  PHU24385.1 284 VNQAMEQLKKMATCGEPLWIRSFetgrEILNYDEYMKEFPLMEKsgdvkskrMCIEASRETGIVFMELPRLLQTFMDVN-QWKEMFPsmisKAATVDVI 381
                 57899*****************99***************876657889999999*************************.******************* PP

                 CTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
       START  86 ssg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                 ++g       ga+qlm+ae q+l+p+v  R+++fvRy++q ++g+w ivdvSvd  +++  ++s+v++++lpSg+++++ sn ++kvtwveh ++++ +
  PHU24385.1 382 CNGeganswdGAVQLMFAEVQMLTPVVGtREVYFVRYCKQIRGGQWGIVDVSVDKVEHNI-DASLVKCRKLPSGCILQEQSNARCKVTWVEHLECQKGI 479
                 ***********************************************************8.9************************************* PP

                 XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 177 phwllrslvksglaegaktwvatlqrqcek 206
                 +++l+r++v+sg+a+ga++w+atlq+qce+
  PHU24385.1 480 VDSLYRVIVNSGQAFGARRWMATLQQQCER 509
                 ****************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    
MVVVDMSNNP PPPSHETNDF FPSPALSLSL AGIFRDGGGE GNSAGNMETM EEVGDESKGG  60
RPREEASTVE ISSENSEPMR SRGSDDDLEH DDTCNEDKED PNNNSRKKKR KKYHRHTVQQ  120
IREMEALFKE SPHPDEKQRQ QLSKQLGLHP RQVKFWFQNR RTQIKAIQER HENSLLKAEI  180
EKLREENKGL REISKNPTCP NCGFASSSNN DPRVPAEEQQ LRIENARLRA EVEKLRAALG  240
KYPLGASPNS SSSYSGGHDE ENKSALDFYT GIFGLEKSRI MHVVNQAMEQ LKKMATCGEP  300
LWIRSFETGR EILNYDEYMK EFPLMEKSGD VKSKRMCIEA SRETGIVFME LPRLLQTFMD  360
VNQWKEMFPS MISKAATVDV ICNGEGANSW DGAVQLMFAE VQMLTPVVGT REVYFVRYCK  420
QIRGGQWGIV DVSVDKVEHN IDASLVKCRK LPSGCILQEQ SNARCKVTWV EHLECQKGIV  480
DSLYRVIVNS GQAFGARRWM ATLQQQCERL LFFMATNIPT KDTPGVATLA GRKSILTLAQ  540
RMTWSFYRML GASSYNTWNK VPSKTGQEDI RVASRKNLTD PGEPLGLILC AVSSIWLPVS  600
RNVLFDFLKD ENRRHEWDVM SNGGPVQSVA NLAKGQDKGN AVSIQAVKLR ENMWILQDTC  660
TNAYESAVVY APVDIAGMQS VITGCDSSNI AMLPSGFSIL PDGLESRPFV ITSRPEDRSS  720
EGGSLLTVAF QILTSSSPTA KLSKESIESI NNLLSCTLHK IKASFQCDNG Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112RKKKRKK
2108112KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein