PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU24207.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 853aa    MW: 95632.9 Da    PI: 6.843
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU24207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.33e-23155256199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++ l+
  PHU24207.1 155 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGDLR 250
                 99*****************************7333.34459************************************************..3488889* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+v+r+
  PHU24207.1 251 VGVRRA 256
                 ***996 PP
2Auxin_resp120.61.2e-39281363183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tk++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp rW +SkWr+Lk
  PHU24207.1 281 AWHAIQTKTMFTVYYKPRTSPAEFIVPYDHYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPQRWLESKWRCLK 363
                 89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 853 aa     Download sequence    
MALGKFLILL GVVPVLEKVI WPIFLYFFCF PVSYLILFCV FKAHAETALY TELWRSCAGP  60
LVTVPKEGEL VYYFPQGHIE QVEASTNQVA DQQMPLYNLP SKILCRVVNV LLKAEPDTDE  120
VYAQVTLMPE PNQDENSLEK EPMRPPPPRF HVHSFCKTLT ASDTSTHGGF SVLRRHADEC  180
LPPLDMSRQP PTQELVAKDL HGNEWRFRHI FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI  240
FLRGENGDLR VGVRRAMRQQ GNAPSSVISS HSMHLGVLAT AWHAIQTKTM FTVYYKPRTS  300
PAEFIVPYDH YMESVKNNYS IGMRFKMRFE GEEAPEQRFT GTIVGIEDAD PQRWLESKWR  360
CLKVRWDENS TIPRPDRVSP WKIEPALNPP SLNAPPVTRP KRPRSSILPS SPDSSVLTRE  420
GPSRVTADLS QANGFSRVLQ GQELSTFRGG FAESNESDLA EKPMMWQPSM DDEKNDIHSA  480
SKRYLSDKWL PLGRPESSLT DLLSGFGVPN TSSHGFLPSA DQASFGGSFL KRQAQDQEKD  540
FSLLGKPWSL LSSSLSLNLM NSSSKAPGQG GDNPYQMRGD SRYSGFGEFS VLPGHRGDNQ  600
QGSWIMPQPV SPYIQLSAHS REMMHKPTVV KQPEAVKPKE GNCKLFGIPL TSNVCTDPVM  660
MRKSSLNDSA SDMNIGIHPH QSHATDSDQR SEQSKGSKID NDHDKQFHAF HIASRERDGK  720
GHSSSTRSCT KVHKQGTALG RSVDLAKFNN YDELIAELDQ LFDFNGELKA QSKSWLVVYT  780
DDEGDMMLVG DDPWQEFCGM VRKIFIYTKE EVQRMNPGTL NSKGEDTSSV AEGSDAKEGK  840
NLQLPSESGQ EES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein